Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0022373

Physical Location & Seq

Genomic Coordinates Reverse (-)

10346698 .. 10349089

Gene Structure 2392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG124100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGATTTCCGGTTCCCGTACTCGCCTCTGGAGGTTGCGACGCCGAGCTCCGTCCAGTTCGGCATCCTCAGCCCCGGCGAGATCAGGCAAATGTCGGTGCTGGAGGTCGAGGATGGCCGTTCAATGCTGAACGGGAAGCCGGTGAGAGGCGGCTTGAGTGACCCTCGGCTTGGTCCGATTGACAGGCACAATAGGTGTGAGACTTGTGCCAATAACTTGAGCGAGTGCCCGGGCCATTTCGGTCACATTGAGCTCGCCAAGCCTGTGTTCCACTTCGGGTTTATGAAGACTCTGCTGTCTGTAATGCGCTGCGTTTGCTTCAATTGCTCCAAACTTCTACTCGATGAGGAAGATGTTAAGTTTAAACAAGCTTTGAGAATCAAGAAGCCTAAAGATAGGCTAAAAAAGTTTGTGGATGCATGCAAAAACAAGACCAAGTGTGAAGGTGGTGATGAAATTGACCGGCAGGGCTCAACATCCGGTCAACATGTAAAGCAAAGTTGGGGTGGCTGTGGTGCTCAGCAGCCCAAGTTCTCTATGGCTGGTTTGGAACTGGTTGCAGAGTACAAATCACAAAGGAAACAATATGATGAGGAACAGCTTCCTGAACCAGTGGAAAGGAAACAAATCCTTACTGCAGAAAAGGTTCTTAGCTTATTAAAGAGGATAAGTGATGAGGACTGCCAATTCTTGGGACTGAACCCTGAATATGCTCGACCAGATTGGATGATTTTACAAGTTCTTCCTATTCCTCCACCAGCTGTGAGACCCCCGGTGATGATGAGCAGCTCTGCCATGAGTGAGGATGATTTAACACATCAGTTGTCCATGATTATTCGCCACAACGAGAATTTGAGGAAACAGGAAAAACATGGTTCAGCTGCTCATATCATTTCACAGTTTACACAAATCTTGCAATACTACATATCCACATATTTTGACAATAGCTTGCCTGGACTACCAAAGGCTGCTCATGGATCGACAAAGAGGCCCATTAAATCAATATGTTGTAGGCTTAAGGCAAAGCATGGCCGGATTAGAGGAAACTTGATGGGGAAGAGAGTCGATTTCTCAGCACGGACAGTTATTACACCAGATCCGAACCTTAGCCTTGATCAATTAGGAGTACCATGGAGCATTGCTATGAATCTCACATACACAGAGACTGTGACTCCATTTAATAAAGAAGGGTTGAAGGAGCTTGTTGAGTATGGGCCGCATCCCCCACCTGGACTAACTGGTGCAAAGTACATCATACGAGATGATGGCCGAAGACTCGATCTTCGTTACATGAAGAAAGATAGTGATCATCATTTGGAGCTTGGTTATAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

445

Amino Acids

50.23

Weight (kDa)

8.92

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	16 - 350	1.3e-102	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	352 - 445	1.4e-22	RNA polymerase Rpb1, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0022373)

Species	Orthologous Gene IDs
malus_domestica	MD02G1123300.v1.1 MD02G1126000.v1.1
rosa_multiflora	Rmu_sc0003434.1_g000004
rosa_samantha	Rh2DG124100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1329
AasI	GACNNNNNNGTC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	691
AciI	CCGC	2 cut(s)	150, 1217
AclWI	GGATC	2 cut(s)	985, 1091
AcoI	YGGCCR	3 cut(s)	115, 1030, 1267
AcsI	RAATTY	1 cut(s)	850
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	4 cut(s)	20, 566, 1128, 1250
AfiI	CCNNNNNNNGG	4 cut(s)	146, 170, 691, 1229
AflII	CTTAAG	1 cut(s)	1016
AflIII	ACRYGT	1 cut(s)	487
AgsI	TTSAA	3 cut(s)	123, 322, 1195
AjnI	CCWGG	2 cut(s)	952, 1228
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw21I	GWGCWC	3 cut(s)	50, 255, 520
Alw26I	GTCTC	3 cut(s)	194, 760, 1157
AlwI	GGATC	2 cut(s)	985, 1091
AlwNI	CAGNNNCTG	1 cut(s)	1166
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	6 cut(s)	115, 232, 989, 1030, 1214, 1267
ApeKI	GCWGC	5 cut(s)	309, 523, 786, 881, 968
ApoI	RAATTY	1 cut(s)	850
ArsI	GACNNNNNNTTYG	2 cut(s)	1266, 1298
Asp700I	GAANNNNTTC	2 cut(s)	600, 645
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	4 cut(s)	173, 232, 990, 1214
AsuC2I	CCSGG	4 cut(s)	75, 230, 231, 773
AsuHPI	GGTGA	3 cut(s)	154, 461, 787
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	230
BanII	GRGCYC	3 cut(s)	50, 255, 473
BbsI	GAAGAC	2 cut(s)	293, 1279
Bbv12I	GWGCWC	3 cut(s)	50, 255, 520
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	5 cut(s)	296, 535, 798, 868, 955
BccI	CCATC	3 cut(s)	107, 1045, 1259
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	2 cut(s)	954, 1230
BclI	TGATCA	2 cut(s)	1114, 1306
BcnI	CCSGG	4 cut(s)	75, 230, 231, 773
BcoDI	GTCTC	3 cut(s)	194, 760, 1157
BfmI	CTRYAG	1 cut(s)	636
BfrI	CTTAAG	1 cut(s)	1016
BisI	GCNGC	7 cut(s)	151, 310, 524, 787, 882, 969, 1217
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	7 cut(s)	152, 311, 525, 788, 883, 970, 1218
Bme1390I	CCNGG	6 cut(s)	75, 230, 231, 773, 954, 1230
Bme18I	GGWCC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	4 cut(s)	173, 232, 990, 1214
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	6 cut(s)	75, 230, 231, 773, 954, 1230
BmsI	GCATC	3 cut(s)	72, 406, 1228
BpiI	GAAGAC	2 cut(s)	293, 1279
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	2 cut(s)	50, 122
Bpu10I	CCTNAGC	2 cut(s)	68, 1106
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	2 cut(s)	175, 238
BpuMI	CCSGG	4 cut(s)	75, 230, 231, 773
BsaBI	GATNNNNATC	1 cut(s)	1305
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	760
BsaJI	CCNNGG	5 cut(s)	73, 164, 229, 771, 1130
BsaWI	WCCGGW	2 cut(s)	9, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	1156, 1186
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 170, 691, 1229
Bse118I	RCCGGY	2 cut(s)	139, 462
Bse1I	ACTGG	4 cut(s)	55, 558, 611, 1243
Bse3DI	GCAATG	1 cut(s)	1137
Bse8I	GATNNNNATC	1 cut(s)	1305
BseBI	CCWGG	2 cut(s)	954, 1230
BseDI	CCNNGG	5 cut(s)	73, 164, 229, 771, 1130
BseGI	GGATG	7 cut(s)	63, 118, 421, 476, 732, 811, 1219
BseJI	GATNNNNATC	1 cut(s)	1305
BseLI	CCNNNNNNNGG	4 cut(s)	146, 170, 691, 1229
BseMI	GCAATG	1 cut(s)	1137
BseMII	CTCAG	3 cut(s)	82, 533, 1086
BseNI	ACTGG	4 cut(s)	55, 558, 611, 1243
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	5 cut(s)	296, 535, 798, 868, 955
BshFI	GGCC	6 cut(s)	117, 234, 991, 1032, 1216, 1269
BsiHKAI	GWGCWC	3 cut(s)	50, 255, 520
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	8 cut(s)	10, 75, 140, 230, 463, 480, 773, 1033
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	4 cut(s)	146, 170, 691, 1229
BsmAI	GTCTC	3 cut(s)	194, 760, 1157
BsmFI	GGGAC	1 cut(s)	708
BsnI	GGCC	6 cut(s)	117, 234, 991, 1032, 1216, 1269
Bso31I	GGTCTC	1 cut(s)	760
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	5 cut(s)	50, 230, 255, 473, 520
Bsp143I	GATC	6 cut(s)	81, 977, 1096, 1114, 1279, 1306
Bsp1720I	GCTNAGC	1 cut(s)	519
Bsp19I	CCATGG	1 cut(s)	1130
BspACI	CCGC	2 cut(s)	150, 1217
BspANI	GGCC	6 cut(s)	117, 234, 991, 1032, 1216, 1269
BspCNI	CTCAG	3 cut(s)	81, 532, 1085
BspLI	GGNNCC	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	2 cut(s)	985, 1091
BspTI	CTTAAG	1 cut(s)	1016
BspTNI	GGTCTC	1 cut(s)	760
BsrDI	GCAATG	1 cut(s)	1137
BsrFI	RCCGGY	2 cut(s)	139, 462
BsrI	ACTGG	4 cut(s)	55, 558, 611, 1243
BssAI	RCCGGY	2 cut(s)	139, 462
BssECI	CCNNGG	5 cut(s)	73, 164, 229, 771, 1130
BssMI	GATC	6 cut(s)	81, 977, 1096, 1114, 1279, 1306
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	1130
Bst2UI	CCWGG	2 cut(s)	954, 1230
Bst4CI	ACNGT	3 cut(s)	900, 1084, 1168
Bst6I	CTCTTC	1 cut(s)	1052
BstACI	GRCGYC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	1016
BstC8I	GCNNGC	3 cut(s)	255, 421, 950
BstDEI	CTNAG	5 cut(s)	68, 519, 650, 1072, 1106
BstDSI	CCRYGG	1 cut(s)	1130
BstF5I	GGATG	7 cut(s)	63, 118, 421, 476, 732, 811, 1219
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	6 cut(s)	84, 980, 1099, 1117, 1282, 1309
BstMAI	GTCTC	3 cut(s)	194, 760, 1157
BstMBI	GATC	6 cut(s)	81, 977, 1096, 1114, 1279, 1306
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 259, 315, 324
BstNI	CCWGG	2 cut(s)	954, 1230
BstNSI	RCATGY	2 cut(s)	423, 491
BstSCI	CCNGG	6 cut(s)	73, 228, 229, 771, 952, 1228
BstSFI	CTRYAG	1 cut(s)	636
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	5 cut(s)	296, 535, 798, 868, 955
BstV2I	GAAGAC	2 cut(s)	293, 1279
BstX2I	RGATCY	1 cut(s)	1096
BstYI	RGATCY	1 cut(s)	1096
BsuRI	GGCC	6 cut(s)	117, 234, 991, 1032, 1216, 1269
BtgI	CCRYGG	1 cut(s)	1130
BtsCI	GGATG	7 cut(s)	63, 118, 421, 476, 732, 811, 1219
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	3 cut(s)	255, 421, 950
CaiI	CAGNNNCTG	1 cut(s)	1166
CfoI	GCGC	1 cut(s)	309
Cfr10I	RCCGGY	2 cut(s)	139, 462
Cfr13I	GGNCC	4 cut(s)	173, 232, 990, 1214
Cfr9I	CCCGGG	1 cut(s)	229
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	4 cut(s)	19, 565, 1127, 1249
CspCI	CAANNNNNGTGG	2 cut(s)	919, 954
CviAII	CATG	9 cut(s)	420, 488, 796, 829, 872, 974, 1028, 1131, 1291
CviQI	GTAC	4 cut(s)	19, 565, 1127, 1249
DdeI	CTNAG	5 cut(s)	68, 519, 650, 1072, 1106
DpnI	GATC	6 cut(s)	83, 979, 1098, 1116, 1281, 1308
DpnII	GATC	6 cut(s)	81, 977, 1096, 1114, 1279, 1306
DraI	TTTAAA	1 cut(s)	364
DrdI	GACNNNNNNGTC	1 cut(s)	295
DseDI	GACNNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	3 cut(s)	115, 1030, 1267
Eam1104I	CTCTTC	1 cut(s)	1052
EarI	CTCTTC	1 cut(s)	1052
Ecl136II	GAGCTC	2 cut(s)	48, 253
Eco130I	CCWWGG	1 cut(s)	1130
Eco24I	GRGCYC	3 cut(s)	50, 255, 473
Eco31I	GGTCTC	1 cut(s)	760
Eco47I	GGWCC	1 cut(s)	173
Eco53kI	GAGCTC	2 cut(s)	48, 253
Eco88I	CYCGRG	1 cut(s)	229
EcoICRI	GAGCTC	2 cut(s)	48, 253
EcoRII	CCWGG	2 cut(s)	952, 1228
EcoT14I	CCWWGG	1 cut(s)	1130
EcoT22I	ATGCAT	1 cut(s)	421
EcoT38I	GRGCYC	3 cut(s)	50, 255, 473
ErhI	CCWWGG	1 cut(s)	1130
FaeI	CATG	9 cut(s)	423, 491, 799, 832, 875, 977, 1031, 1134, 1294
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	9 cut(s)	419, 487, 795, 828, 871, 973, 1027, 1130, 1290
FbaI	TGATCA	2 cut(s)	1114, 1306
Fnu4HI	GCNGC	7 cut(s)	151, 310, 524, 787, 882, 969, 1217
FokI	GGATG	7 cut(s)	50, 125, 428, 463, 739, 818, 1206
FriOI	GRGCYC	3 cut(s)	50, 255, 473
Fsp4HI	GCNGC	7 cut(s)	151, 310, 524, 787, 882, 969, 1217
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	7 cut(s)	151, 310, 524, 787, 882, 969, 1217
GsuI	CTGGAG	2 cut(s)	50, 122
HaeIII	GGCC	6 cut(s)	117, 234, 991, 1032, 1216, 1269
HapII	CCGG	8 cut(s)	10, 75, 140, 230, 463, 480, 773, 1033
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	309
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	9 cut(s)	423, 491, 799, 832, 875, 977, 1031, 1134, 1294
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	485
HindII	GTYRAC	1 cut(s)	485
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	6 cut(s)	289, 378, 1062, 1147, 1171, 1275
HpaII	CCGG	8 cut(s)	10, 75, 140, 230, 463, 480, 773, 1033
HphI	GGTGA	3 cut(s)	154, 461, 787
Hpy166II	GTNNAC	2 cut(s)	485, 903
Hpy188I	TCNGA	2 cut(s)	177, 1101
Hpy188III	TCNNGA	3 cut(s)	29, 382, 605
Hpy8I	GTNNAC	2 cut(s)	485, 903
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	437, 1181, 1189
HpyCH4III	ACNGT	3 cut(s)	900, 1084, 1168
HpyCH4V	TGCA	6 cut(s)	419, 423, 560, 638, 916, 1244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 259, 315, 324
HpyF3I	CTNAG	5 cut(s)	68, 519, 650, 1072, 1106
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	9 cut(s)	423, 491, 799, 832, 875, 977, 1031, 1134, 1294
HspAI	GCGC	1 cut(s)	307
Ksp22I	TGATCA	2 cut(s)	1114, 1306
Kzo9I	GATC	6 cut(s)	81, 977, 1096, 1114, 1279, 1306
LmnI	GCTCC	5 cut(s)	53, 332, 1134, 1198, 1318
Lsp1109I	GCAGC	5 cut(s)	296, 535, 798, 868, 955
LweI	GCATC	3 cut(s)	72, 406, 1228
MaeIII	GTNAC	4 cut(s)	158, 242, 1168, 1286
MalI	GATC	6 cut(s)	83, 979, 1098, 1116, 1281, 1308
MboI	GATC	6 cut(s)	81, 977, 1096, 1114, 1279, 1306
MboII	GAAGA	7 cut(s)	298, 362, 734, 1069, 1274, 1284, 1306
MfeI	CAATTG	1 cut(s)	322
MflI	RGATCY	1 cut(s)	1096
MhlI	GDGCHC	5 cut(s)	50, 230, 255, 473, 520
MluCI	AATT	5 cut(s)	322, 456, 686, 850, 1118
MlyI	GAGTC	4 cut(s)	283, 1071, 1165, 1269
Mph1103I	ATGCAT	1 cut(s)	421
MroXI	GAANNNNTTC	2 cut(s)	600, 645
MseI	TTAA	7 cut(s)	357, 363, 659, 812, 996, 1017, 1179
MslI	CAYNNNNRTG	1 cut(s)	1142
MspA1I	CMGCKG	2 cut(s)	761, 881
MspCI	CTTAAG	1 cut(s)	1016
MspI	CCGG	8 cut(s)	10, 75, 140, 230, 463, 480, 773, 1033
MspR9I	CCNGG	6 cut(s)	75, 230, 231, 773, 954, 1230
MssI	GTTTAAAC	1 cut(s)	364
MunI	CAATTG	1 cut(s)	322
MvaI	CCWGG	2 cut(s)	954, 1230
MwoI	GCNNNNNNNGC	4 cut(s)	69, 259, 315, 324
NciI	CCSGG	4 cut(s)	75, 230, 231, 773
NcoI	CCATGG	1 cut(s)	1130
NdeII	GATC	6 cut(s)	81, 977, 1096, 1114, 1279, 1306
NlaIII	CATG	9 cut(s)	423, 491, 799, 832, 875, 977, 1031, 1134, 1294
NlaIV	GGNNCC	1 cut(s)	14
NmeAIII	GCCGAG	2 cut(s)	69, 145
NmuCI	GTSAC	3 cut(s)	158, 242, 1168
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	2 cut(s)	423, 491
PaeI	GCATGC	1 cut(s)	423
PciI	ACATGT	1 cut(s)	487
PdmI	GAANNNNTTC	2 cut(s)	600, 645
PfeI	GAWTC	2 cut(s)	378, 1147
PflMI	CCANNNNNTGG	1 cut(s)	691
PkrI	GCNGC	7 cut(s)	152, 311, 525, 788, 883, 970, 1218
PleI	GAGTC	4 cut(s)	283, 1070, 1165, 1269
PmeI	GTTTAAAC	1 cut(s)	364
PpsI	GAGTC	4 cut(s)	283, 1070, 1165, 1269
PscI	ACATGT	1 cut(s)	487
PsiI	TTATAA	1 cut(s)	1329
Psp124BI	GAGCTC	2 cut(s)	50, 255
Psp6I	CCWGG	2 cut(s)	952, 1228
PspGI	CCWGG	2 cut(s)	952, 1228
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	4 cut(s)	173, 232, 990, 1214
PstI	CTGCAG	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	1166
PsuI	RGATCY	1 cut(s)	1096
PvuII	CAGCTG	2 cut(s)	761, 881
RsaI	GTAC	4 cut(s)	20, 566, 1128, 1250
RsaNI	GTAC	4 cut(s)	19, 565, 1127, 1249
RseI	CAYNNNNRTG	1 cut(s)	1142
SacI	GAGCTC	2 cut(s)	50, 255
SaqAI	TTAA	7 cut(s)	357, 363, 659, 812, 996, 1017, 1179
SatI	GCNGC	7 cut(s)	151, 310, 524, 787, 882, 969, 1217
Sau3AI	GATC	6 cut(s)	81, 977, 1096, 1114, 1279, 1306
Sau96I	GGNCC	4 cut(s)	173, 232, 990, 1214
SchI	GAGTC	4 cut(s)	283, 1071, 1165, 1269
ScrFI	CCNGG	6 cut(s)	75, 230, 231, 773, 954, 1230
SduI	GDGCHC	5 cut(s)	50, 230, 255, 473, 520
SfaNI	GCATC	3 cut(s)	72, 406, 1228
SfcI	CTRYAG	1 cut(s)	636
SinI	GGWCC	1 cut(s)	173
SmaI	CCCGGG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	1142
SmlI	CTYRAG	3 cut(s)	154, 217, 1016
SmoI	CTYRAG	3 cut(s)	154, 217, 1016
SphI	GCATGC	1 cut(s)	423
SrfI	GCCCGGGC	1 cut(s)	231
Sse9I	AATT	5 cut(s)	322, 456, 686, 850, 1118
SsiI	CCGC	2 cut(s)	150, 1217
SstI	GAGCTC	2 cut(s)	50, 255
StyD4I	CCNGG	6 cut(s)	73, 228, 229, 771, 952, 1228
StyI	CCWWGG	1 cut(s)	1130
TaaI	ACNGT	3 cut(s)	900, 1084, 1168
TaqI	TCGA	6 cut(s)	108, 342, 715, 980, 1065, 1278
TaqII	GACCGA	1 cut(s)	230
TasI	AATT	5 cut(s)	322, 456, 686, 850, 1118
TatI	WGTACW	2 cut(s)	564, 1248
TauI	GCSGC	2 cut(s)	153, 1219
TfiI	GAWTC	2 cut(s)	378, 1147
Tru1I	TTAA	7 cut(s)	357, 363, 659, 812, 996, 1017, 1179
Tru9I	TTAA	7 cut(s)	357, 363, 659, 812, 996, 1017, 1179
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	3 cut(s)	158, 242, 1168
TseI	GCWGC	5 cut(s)	309, 523, 786, 881, 968
Tsp45I	GTSAC	3 cut(s)	158, 242, 1168
TspDTI	ATGAA	4 cut(s)	299, 468, 1160, 1307
TspGWI	ACGGA	2 cut(s)	40, 1093
TspMI	CCCGGG	1 cut(s)	229
TspRI	CASTG	1 cut(s)	618
Van91I	CCANNNNNTGG	1 cut(s)	691
Vha464I	CTTAAG	1 cut(s)	1016
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	850
XceI	RCATGY	2 cut(s)	423, 491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmaI	CCCGGG	1 cut(s)	229
XmnI	GAANNNNTTC	2 cut(s)	600, 645
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.