MD02G1129200.v1.1

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0024373
Physical Location & Seq
Forward (+)
10451885 .. 10452880
996 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1129200.v1.1.491

Sequence Viewer

Length: 483 bp
ATGGTGAACTTTCTAGGGTTTATAGCTTTTATCTTAATATTCTCAGTATCATCAGTCCACTCCAACTGCCCAAGCCAGATTTTCCCAAATACAAGTTACTACGAATGTGACGACCTCCCTACACTCAACTCTCGCCTCTACTGGTTGTTCGACCCGTCTATCTCCTCCTTGTCGATCGCCTTCACTGCTCCGCCTGCCGAACCAGAGGGCTGGATTGCATGGGGGATAAACCCAATCAGCACGGGCATGCTCGGGGCACAAGTTTTGGTTGCCTTTAGACAACCCATCGGCAGCATAACGGTGAAGACATTCCATTTAACTTCGTATACCATCCTAGTAGAGGCTCCAATTGATTTTGAGGTACGGCAGATGAGTGCCGAGGCGTCCACGGGGTTGGGATTCATCACCATATTTGTTACGATAAGGATGCCAGAAAATATTCAAACTTTGAACCTGGCTGTTCGGTATGTAGTGATGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

161

Amino Acids

17.71

Weight (kDa)

4.74

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 83 - 151 3.3e-11 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024373)

Species Orthologous Gene IDs
malus_domestica MD02G1129200.v1.1
pyrus_communis pycom02g10100 pycom17g24100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 326
AciI CCGC 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 2 cut(s) 443, 451
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 291
Asp700I GAANNNNTTC 2 cut(s) 308, 438
AsuHPI GGTGA 3 cut(s) 16, 313, 397
AvaI CYCGRG 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 303
BccI CCATC 2 cut(s) 293, 338
BceAI ACGGC 1 cut(s) 380
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 1 cut(s) 455
BfaI CTAG 2 cut(s) 14, 335
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 1 cut(s) 417
BpiI GAAGAC 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 378, 387
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 2 cut(s) 378, 387
BseGI GGATG 2 cut(s) 330, 432
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 177
BsiEI CGRYCG 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 378, 387
BssMI GATC 1 cut(s) 174
BssNAI GTATAC 1 cut(s) 327
BssNI GRCGYC 1 cut(s) 383
Bst1107I GTATAC 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 195, 248
BstDEI CTNAG 1 cut(s) 43
BstDSI CCRYGG 1 cut(s) 387
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 2 cut(s) 330, 432
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 185, 194
BstNI CCWGG 1 cut(s) 455
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 453
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 303
BstV2I GAAGAC 1 cut(s) 311
BstXI CCANNNNNNTGG 2 cut(s) 210, 394
BstZ17I GTATAC 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 2 cut(s) 330, 432
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 195, 248
CseI GACGC 1 cut(s) 372
Csp6I GTAC 1 cut(s) 362
CviAII CATG 2 cut(s) 219, 247
CviJI RGCY 5 cut(s) 26, 75, 210, 344, 458
CviKI_1 RGCY 5 cut(s) 26, 75, 210, 344, 458
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
EciI GGCGGA 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 453
FaeI CATG 2 cut(s) 222, 250
FaiI YATR 7 cut(s) 23, 220, 248, 296, 327, 410, 468
FatI CATG 2 cut(s) 218, 246
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 2 cut(s) 317, 439
Fsp4HI GCNGC 1 cut(s) 292
FspBI CTAG 2 cut(s) 14, 335
GluI GCNGC 1 cut(s) 292
HgaI GACGC 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 2 cut(s) 222, 250
HinfI GANTC 1 cut(s) 399
HphI GGTGA 3 cut(s) 16, 313, 397
Hpy166II GTNNAC 4 cut(s) 7, 58, 327, 387
Hpy8I GTNNAC 4 cut(s) 7, 58, 327, 387
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 194
HpyF3I CTNAG 1 cut(s) 43
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 2 cut(s) 222, 250
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 193, 349
LpnPI CCDG 8 cut(s) 89, 127, 196, 207, 216, 440, 444, 467
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 1 cut(s) 417
MaeI CTAG 2 cut(s) 14, 335
MaeIII GTNAC 3 cut(s) 95, 107, 415
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 1 cut(s) 316
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 1 cut(s) 348
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 7 cut(s) 125, 146, 175, 199, 334, 352, 373
MroXI GAANNNNTTC 2 cut(s) 308, 438
MseI TTAA 2 cut(s) 35, 317
MslI CAYNNNNRTG 2 cut(s) 245, 299
MspR9I CCNGG 1 cut(s) 455
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 185, 194
NdeII GATC 1 cut(s) 174
NlaIII CATG 2 cut(s) 222, 250
NlaIV GGNNCC 1 cut(s) 345
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 107
NspI RCATGY 1 cut(s) 250
PaeI GCATGC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 2 cut(s) 308, 438
PfeI GAWTC 1 cut(s) 399
PkrI GCNGC 1 cut(s) 293
Ple19I CGATCG 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 1 cut(s) 345
PvuI CGATCG 1 cut(s) 177
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
RseI CAYNNNNRTG 2 cut(s) 245, 299
SaqAI TTAA 2 cut(s) 35, 317
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 1 cut(s) 259
SetI ASST 4 cut(s) 28, 117, 363, 456
SfaNI GCATC 1 cut(s) 417
SmiMI CAYNNNNRTG 2 cut(s) 245, 299
SphI GCATGC 1 cut(s) 250
Sse9I AATT 1 cut(s) 348
SsiI CCGC 1 cut(s) 191
SspI AATATT 2 cut(s) 39, 439
SspMI CTAG 2 cut(s) 14, 335
StyD4I CCNGG 1 cut(s) 453
TaaI ACNGT 1 cut(s) 301
TaqI TCGA 2 cut(s) 150, 173
TasI AATT 1 cut(s) 348
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 2 cut(s) 35, 317
Tru9I TTAA 2 cut(s) 35, 317
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 291
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 391
TspRI CASTG 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 338
XceI RCATGY 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 2 cut(s) 308, 438
XspI CTAG 2 cut(s) 14, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.