pycom02g10100

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0024373
Physical Location & Seq
Reverse (-)
6983849 .. 6985059
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10100.1

Sequence Viewer

Length: 792 bp
ATGGTGAACTTTCTAGGGTTTATAGCTTTGATCTTAATATTCTCAGTATCACCAGTCCACTCCAACTGCCCAAGCCAGATTTTCCCAAATACAAGTTACAACGAATGTGACGACCTCCCTACGCTCAACTCTCGCCTTTACTGGTTGTTCGACCCGTCTATCTCCTCCTTGTCGATCGCCTTCACTGCTCCGCCTGCCGAACCAGAGGGCTGGATTGCATGGGGGATAAACCCAATCAGCACAGGCATGCTCGGGGCACAAGTGTTGGTTGCCTTTAGACAACCCATCGGCAGCATAACGGTGAAGACGTTCCATTTAACCTCGTATACCATCCTAGTAGAGGCTCCAATTGATTTTGAGGTATGGCAGATGAGTGCCGAGACATCCACGGCGTTGGGATTCATCACCATATTTGTTACGATAAGGATGCCAGAAAATATTCAGACTTTGAACATGGTATGGCAAGTAGGCGCAGCTGTACCGGATGGAGTTCCTCTTATCCACGAGCTCAACACAGAGAATCTGCACTCCAGAAAACCTCTAACTATAAGAGCACGGGGCCAGAAGTCACCGGAAAAAAAAATTACTGGCTTTGTTGTTAACATCGTGATTGCAATCGGCATCTCACTATTTGTTACACTGGTTATCCATCTCTGCAGTAAGATGTGTTGTAAGAAAGAGCACATGGAACACACAGATATCACCAAAGCCGCAACCTCAGCCGCAGCCACAGCAGCAACCTCTGCCGCAACCACAGCAGCAACCTCAGCTGCAACCGCAGGTTGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

264

Amino Acids

28.32

Weight (kDa)

6.14

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 83 - 181 3.3e-23 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024373)

Species Orthologous Gene IDs
malus_domestica MD02G1129200.v1.1
pyrus_communis pycom02g10100 pycom17g24100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 770
AccI GTMKAC 1 cut(s) 326
AciI CCGC 5 cut(s) 191, 711, 723, 747, 777
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 1 cut(s) 451
AluBI AGCT 4 cut(s) 26, 476, 508, 770
AluI AGCT 4 cut(s) 26, 476, 508, 770
Alw21I GWGCWC 3 cut(s) 510, 556, 684
Alw26I GTCTC 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 1 cut(s) 559
ApeKI GCWGC 6 cut(s) 291, 473, 725, 734, 758, 770
Asp700I GAANNNNTTC 2 cut(s) 308, 438
AspLEI GCGC 1 cut(s) 473
AspS9I GGNCC 1 cut(s) 559
AsuHPI GGTGA 6 cut(s) 16, 42, 313, 397, 561, 694
AvaI CYCGRG 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 510
BauI CACGAG 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 3 cut(s) 510, 556, 684
BbvCI CCTCAGC 2 cut(s) 718, 766
BbvI GCAGC 6 cut(s) 303, 485, 737, 746, 757, 770
BccI CCATC 4 cut(s) 293, 338, 479, 657
BceAI ACGGC 1 cut(s) 405
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 2 cut(s) 14, 335
BfmI CTRYAG 1 cut(s) 655
BfuAI ACCTGC 1 cut(s) 770
BisI GCNGC 9 cut(s) 292, 474, 711, 723, 726, 735, 747, 759, 771
BlsI GCNGC 9 cut(s) 293, 475, 712, 724, 727, 736, 748, 760, 772
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 559
BmiI GGNNCC 2 cut(s) 345, 560
BmsI GCATC 2 cut(s) 417, 630
BpiI GAAGAC 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 514
Bpu10I CCTNAGC 2 cut(s) 718, 766
BsaBI GATNNNNATC 1 cut(s) 614
BsaJI CCNNGG 1 cut(s) 387
BsaWI WCCGGW 2 cut(s) 481, 571
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse1I ACTGG 4 cut(s) 53, 146, 592, 645
Bse8I GATNNNNATC 1 cut(s) 614
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 4 cut(s) 330, 383, 432, 490
BseJI GATNNNNATC 1 cut(s) 614
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMII CTCAG 3 cut(s) 57, 732, 780
BseNI ACTGG 4 cut(s) 53, 146, 592, 645
BseRI GAGGAG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 6 cut(s) 303, 485, 737, 746, 757, 770
BsgI GTGCAG 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 561
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 3 cut(s) 510, 556, 684
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 2 cut(s) 482, 572
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 374
BsnI GGCC 1 cut(s) 561
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 4 cut(s) 259, 510, 556, 684
Bsp143I GATC 2 cut(s) 30, 174
BspACI CCGC 5 cut(s) 191, 711, 723, 747, 777
BspANI GGCC 1 cut(s) 561
BspCNI CTCAG 3 cut(s) 56, 731, 779
BspLI GGNNCC 2 cut(s) 345, 560
BspMAI CTGCAG 1 cut(s) 659
BspMI ACCTGC 1 cut(s) 770
BsrI ACTGG 4 cut(s) 53, 146, 592, 645
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 2 cut(s) 30, 174
BssNAI GTATAC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 503
Bst1107I GTATAC 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 503
Bst4CI ACNGT 1 cut(s) 301
BstAPI GCANNNNNTGC 1 cut(s) 743
BstC8I GCNNGC 2 cut(s) 195, 248
BstDEI CTNAG 3 cut(s) 43, 718, 766
BstDSI CCRYGG 1 cut(s) 387
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 4 cut(s) 330, 383, 432, 490
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 2 cut(s) 33, 177
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 2 cut(s) 30, 174
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 9 cut(s) 185, 194, 719, 731, 734, 743, 755, 767, 776
BstNSI RCATGY 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 655
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 6 cut(s) 303, 485, 737, 746, 757, 770
BstV2I GAAGAC 1 cut(s) 311
BstXI CCANNNNNNTGG 2 cut(s) 210, 394
BstZ17I GTATAC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 561
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 4 cut(s) 330, 383, 432, 490
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 638
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 2 cut(s) 195, 248
CfoI GCGC 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 559
Csp6I GTAC 1 cut(s) 479
CviAII CATG 4 cut(s) 219, 247, 454, 685
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 3 cut(s) 43, 718, 766
DpnI GATC 2 cut(s) 32, 176
DpnII GATC 2 cut(s) 30, 174
EciI GGCGGA 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 508
Eco24I GRGCYC 1 cut(s) 510
Eco32I GATATC 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 508
Eco88I CYCGRG 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 508
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoRV GATATC 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 510
FaeI CATG 4 cut(s) 222, 250, 457, 688
FatI CATG 4 cut(s) 218, 246, 453, 684
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 9 cut(s) 292, 474, 711, 723, 726, 735, 747, 759, 771
FokI GGATG 4 cut(s) 317, 370, 439, 497
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 9 cut(s) 292, 474, 711, 723, 726, 735, 747, 759, 771
FspBI CTAG 2 cut(s) 14, 335
GlaI GCGC 1 cut(s) 472
GluI GCNGC 9 cut(s) 292, 474, 711, 723, 726, 735, 747, 759, 771
GsuI CTGGAG 1 cut(s) 514
HaeIII GGCC 1 cut(s) 561
HapII CCGG 2 cut(s) 482, 572
HhaI GCGC 1 cut(s) 473
Hin1II CATG 4 cut(s) 222, 250, 457, 688
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 2 cut(s) 399, 520
HpaI GTTAAC 1 cut(s) 601
HpaII CCGG 2 cut(s) 482, 572
HphI GGTGA 6 cut(s) 16, 42, 313, 397, 561, 694
Hpy166II GTNNAC 4 cut(s) 7, 58, 327, 601
Hpy188I TCNGA 1 cut(s) 444
Hpy188III TCNNGA 2 cut(s) 531, 607
Hpy8I GTNNAC 4 cut(s) 7, 58, 327, 601
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 5 cut(s) 218, 526, 614, 657, 773
HpyF10VI GCNNNNNNNGC 9 cut(s) 185, 194, 719, 731, 734, 743, 755, 767, 776
HpyF3I CTNAG 3 cut(s) 43, 718, 766
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 4 cut(s) 222, 250, 457, 688
HspAI GCGC 1 cut(s) 471
KspAI GTTAAC 1 cut(s) 601
Kzo9I GATC 2 cut(s) 30, 174
LmnI GCTCC 2 cut(s) 193, 349
Lsp1109I GCAGC 6 cut(s) 303, 485, 737, 746, 757, 770
LweI GCATC 2 cut(s) 417, 630
MaeI CTAG 2 cut(s) 14, 335
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 5 cut(s) 95, 107, 415, 567, 634
MalI GATC 2 cut(s) 32, 176
MboI GATC 2 cut(s) 30, 174
MboII GAAGA 1 cut(s) 316
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 4 cut(s) 259, 510, 556, 684
MluCI AATT 2 cut(s) 348, 582
MmeI TCCRAC 1 cut(s) 87
MroXI GAANNNNTTC 2 cut(s) 308, 438
MseI TTAA 3 cut(s) 35, 317, 600
MslI CAYNNNNRTG 2 cut(s) 245, 299
MspA1I CMGCKG 2 cut(s) 476, 770
MspI CCGG 2 cut(s) 482, 572
MunI CAATTG 1 cut(s) 348
MwoI GCNNNNNNNGC 9 cut(s) 185, 194, 719, 731, 734, 743, 755, 767, 776
NdeII GATC 2 cut(s) 30, 174
NlaIII CATG 4 cut(s) 222, 250, 457, 688
NlaIV GGNNCC 2 cut(s) 345, 560
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 2 cut(s) 107, 567
NspI RCATGY 1 cut(s) 250
PaeI GCATGC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 305
PdmI GAANNNNTTC 2 cut(s) 308, 438
PfeI GAWTC 2 cut(s) 399, 520
PkrI GCNGC 9 cut(s) 293, 475, 712, 724, 727, 736, 748, 760, 772
Ple19I CGATCG 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 510
PspN4I GGNNCC 2 cut(s) 345, 560
PspPI GGNCC 1 cut(s) 559
PstI CTGCAG 1 cut(s) 659
PvuI CGATCG 1 cut(s) 177
PvuII CAGCTG 2 cut(s) 476, 770
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
RseI CAYNNNNRTG 2 cut(s) 245, 299
SacI GAGCTC 1 cut(s) 510
SaqAI TTAA 3 cut(s) 35, 317, 600
SatI GCNGC 9 cut(s) 292, 474, 711, 723, 726, 735, 747, 759, 771
Sau3AI GATC 2 cut(s) 30, 174
Sau96I GGNCC 1 cut(s) 559
SduI GDGCHC 4 cut(s) 259, 510, 556, 684
SfaNI GCATC 2 cut(s) 417, 630
SfcI CTRYAG 1 cut(s) 655
SmiMI CAYNNNNRTG 2 cut(s) 245, 299
SphI GCATGC 1 cut(s) 250
Sse9I AATT 2 cut(s) 348, 582
SsiI CCGC 5 cut(s) 191, 711, 723, 747, 777
SspI AATATT 2 cut(s) 39, 439
SspMI CTAG 2 cut(s) 14, 335
SstI GAGCTC 1 cut(s) 510
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 150, 173
TasI AATT 2 cut(s) 348, 582
TauI GCSGC 3 cut(s) 713, 725, 749
TfiI GAWTC 2 cut(s) 399, 520
Tru1I TTAA 3 cut(s) 35, 317, 600
Tru9I TTAA 3 cut(s) 35, 317, 600
TscAI CASTG 2 cut(s) 190, 645
TseFI GTSAC 2 cut(s) 107, 567
TseI GCWGC 6 cut(s) 291, 473, 725, 734, 758, 770
Tsp45I GTSAC 2 cut(s) 107, 567
TspDTI ATGAA 1 cut(s) 391
TspRI CASTG 2 cut(s) 190, 645
XagI CCTNNNNNAGG 1 cut(s) 338
XceI RCATGY 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 2 cut(s) 308, 438
XspI CTAG 2 cut(s) 14, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.