MD02G1142800.v1.1

Uncharacterised protein family (UPF0261)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
11882736 .. 11883825
1090 bp
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UTR
Exon/CDS
Intron
MD02G1142800.v1.1.491

Sequence Viewer

Length: 393 bp
ATGGTGGTTGGGAGAGTTGGGAGGGGCGGAGATTCGGATGGTGGCGGTGGCGGGGTGGAGAAATCAACGGTGGGGCTGACCATGTTCGGGGTGACGTCTCAGTGTGTGAATGGGGTGAAAGAGAGATTAGAGAAAGAAGGGTATGAAACATTGGTTTTTCATGCCACTGGGGTTGGAGGGAGAGCCATGGAGTCTCTGGTTAGAGATGGGTTCATAAAGGGTGTTTTGGATATCACAACAACAGAGGTTGCAGACAATGTGGTTCAGAAAAGGATTTGTTTAGTACTAAGTGTTGGAGCTTTGGATATGGTAAACTTTGGAGCTAAGGATACCATACCATCCAGTTTCAACACAGAAAGATTCATGAACATAATAAGCAGGTTTCCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

13.75

Weight (kDa)

5.81

Isoelectric Point (pI)

22.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0261_C PF23189 21 - 89 1.7e-31 Uncharacterised protein family (UPF0261) C-terminal domain
UPF0261_C PF23189 87 - 121 1.7e-06 Uncharacterised protein family (UPF0261) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022378)

Species Orthologous Gene IDs
malus_domestica MD02G1142800.v1.1
pyrus_communis pycom02g11230 pycom02g11280 pycom02g11310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 369
AciI CCGC 3 cut(s) 27, 45, 51
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 1 cut(s) 349
AluBI AGCT 2 cut(s) 299, 323
AluI AGCT 2 cut(s) 299, 323
Alw26I GTCTC 2 cut(s) 102, 198
AsuHPI GGTGA 2 cut(s) 103, 127
BccI CCATC 3 cut(s) 32, 200, 346
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 102, 198
BfuAI ACCTGC 1 cut(s) 369
BfuI GTATCC 1 cut(s) 322
BmcAI AGTACT 1 cut(s) 285
BmrI ACTGGG 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse1I ACTGG 2 cut(s) 172, 342
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 43, 338
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 2 cut(s) 172, 342
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 2 cut(s) 102, 198
BsmBI CGTCTC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 3 cut(s) 27, 45, 51
BspCNI CTCAG 1 cut(s) 112
BspHI TCATGA 2 cut(s) 363, 389
BspMI ACCTGC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 172, 342
BssECI CCNNGG 1 cut(s) 186
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 95
BstDEI CTNAG 3 cut(s) 99, 287, 324
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 43, 338
BstMAI GTCTC 2 cut(s) 102, 198
BsuI GTATCC 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 43, 338
BtsIMutI CAGTG 2 cut(s) 107, 165
BveI ACCTGC 1 cut(s) 369
CciI TCATGA 2 cut(s) 363, 389
Csp6I GTAC 1 cut(s) 284
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 5 cut(s) 82, 161, 187, 364, 390
CviJI RGCY 4 cut(s) 76, 185, 299, 323
CviKI_1 RGCY 4 cut(s) 76, 185, 299, 323
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 3 cut(s) 99, 287, 324
EciI GGCGGA 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 186
Eco32I GATATC 1 cut(s) 232
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 5 cut(s) 85, 164, 190, 367, 393
FatI CATG 5 cut(s) 81, 160, 186, 363, 389
FauI CCCGC 1 cut(s) 44
FokI GGATG 2 cut(s) 50, 325
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 5 cut(s) 85, 164, 190, 367, 393
HinfI GANTC 3 cut(s) 32, 191, 360
HphI GGTGA 2 cut(s) 103, 127
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 37, 267
Hpy188III TCNNGA 2 cut(s) 364, 390
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 99, 287, 324
HpySE526I ACGT 1 cut(s) 95
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 5 cut(s) 85, 164, 190, 367, 393
LmnI GCTCC 2 cut(s) 296, 320
LpnPI CCDG 4 cut(s) 153, 182, 355, 364
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 91
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 154, 274
MnlI CCTC 3 cut(s) 15, 170, 238
NcoI CCATGG 1 cut(s) 186
NlaIII CATG 5 cut(s) 85, 164, 190, 367, 393
NmuCI GTSAC 1 cut(s) 91
PagI TCATGA 2 cut(s) 363, 389
PfeI GAWTC 2 cut(s) 32, 360
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 285
SchI GAGTC 1 cut(s) 200
SetI ASST 5 cut(s) 98, 249, 301, 325, 383
SgeI CNNG 9 cut(s) 64, 94, 100, 173, 180, 199, 209, 354, 376
SsiI CCGC 3 cut(s) 27, 45, 51
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 98
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 2 cut(s) 32, 360
TscAI CASTG 2 cut(s) 107, 172
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 5 cut(s) 149, 159, 202, 352, 380
TspRI CASTG 2 cut(s) 107, 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
ZraI GACGTC 1 cut(s) 96
ZrmI AGTACT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.