pycom02g11310

Uncharacterised protein family (UPF0261)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0022378
Physical Location & Seq
Reverse (-)
8003738 .. 8004718
981 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11310.1

Sequence Viewer

Length: 438 bp
ATGGTGGTTGGGAGAGTTGGGAGGGGCGGAGATTCGGATGGTGGCTGTGGCGGGGTGGAGAAATCAACGGTGGGGCTGACCATGTTCGGGGTGACGACTCGGTGTGTGAATGGGGTGAAAGAGAGATTGGAGAAAGAAGGGTATGGAACATTGGTTTTTCATGCCACTGGGGTTGGAGGGAGAGCCATGGAGTCTCTGGTTAGAGATGGGTTCATAAAGGGTGTTTTGGATATCACAACAACAGAGGTTGCAGACAATGTGGTTTGGGGTGTCATGGCTTGCGATGCTTCCCACTTTGATGCCATCATAGAGAAAAGGATTCCTTTAGTACTAAGTGTTGGAGCTTTGGATATGGTAAACTTTGGAGCTAAGGATACCATACCATCCAATTTCAACACAGAAAGATTCATGACCTTAATAAGCAGGTTTCACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEP_hydrolase UPF0261

Protein Analysis

146

Amino Acids

15.43

Weight (kDa)

5.89

Isoelectric Point (pI)

15.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0261_C PF23189 21 - 137 8.4e-51 Uncharacterised protein family (UPF0261) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022378)

Species Orthologous Gene IDs
malus_domestica MD02G1142800.v1.1
pyrus_communis pycom02g11230 pycom02g11280 pycom02g11310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 414
AciI CCGC 2 cut(s) 27, 51
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 1 cut(s) 394
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 2 cut(s) 344, 368
AluI AGCT 2 cut(s) 344, 368
Alw26I GTCTC 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 103, 127
BccI CCATC 4 cut(s) 32, 200, 311, 391
BciVI GTATCC 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 414
BfuI GTATCC 1 cut(s) 367
BmcAI AGTACT 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 2 cut(s) 274, 289
BmuI ACTGGG 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 43, 383
BseLI CCNNNNNNNGG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 198
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 2 cut(s) 27, 51
BspHI TCATGA 2 cut(s) 408, 434
BspMI ACCTGC 1 cut(s) 414
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 332, 369
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 43, 383
BstMAI GTCTC 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 284
BsuI GTATCC 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 2 cut(s) 43, 383
BtsIMutI CAGTG 1 cut(s) 165
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 280
CciI TCATGA 2 cut(s) 408, 434
Csp6I GTAC 1 cut(s) 329
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 6 cut(s) 82, 161, 187, 274, 409, 435
CviJI RGCY 6 cut(s) 45, 76, 185, 278, 344, 368
CviKI_1 RGCY 6 cut(s) 45, 76, 185, 278, 344, 368
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 2 cut(s) 332, 369
EciI GGCGGA 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 186
Eco32I GATATC 1 cut(s) 232
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 6 cut(s) 85, 164, 190, 277, 412, 438
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FatI CATG 6 cut(s) 81, 160, 186, 273, 408, 434
FauI CCCGC 1 cut(s) 44
FokI GGATG 2 cut(s) 50, 370
Hin1II CATG 6 cut(s) 85, 164, 190, 277, 412, 438
HinfI GANTC 5 cut(s) 32, 97, 191, 319, 405
HphI GGTGA 2 cut(s) 103, 127
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 2 cut(s) 409, 435
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 332, 369
Hsp92II CATG 6 cut(s) 85, 164, 190, 277, 412, 438
LmnI GCTCC 2 cut(s) 341, 365
LpnPI CCDG 3 cut(s) 153, 182, 409
LweI GCATC 2 cut(s) 274, 289
MaeIII GTNAC 1 cut(s) 91
MluCI AATT 1 cut(s) 388
MlyI GAGTC 2 cut(s) 91, 200
MmeI TCCRAC 2 cut(s) 154, 319
MnlI CCTC 3 cut(s) 15, 170, 238
MseI TTAA 1 cut(s) 416
MslI CAYNNNNRTG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 284
NcoI CCATGG 1 cut(s) 186
NlaIII CATG 6 cut(s) 85, 164, 190, 277, 412, 438
NmuCI GTSAC 1 cut(s) 91
PagI TCATGA 2 cut(s) 408, 434
PfeI GAWTC 3 cut(s) 32, 319, 405
PleI GAGTC 2 cut(s) 91, 199
PpsI GAGTC 2 cut(s) 91, 199
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 416
ScaI AGTACT 1 cut(s) 330
SchI GAGTC 2 cut(s) 91, 200
SetI ASST 5 cut(s) 249, 346, 370, 416, 428
SfaNI GCATC 2 cut(s) 274, 289
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 1 cut(s) 388
SsiI CCGC 2 cut(s) 27, 51
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 70
TasI AATT 1 cut(s) 388
TatI WGTACW 1 cut(s) 328
TfiI GAWTC 3 cut(s) 32, 319, 405
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 149, 202, 397
TspRI CASTG 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
ZrmI AGTACT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.