Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0028567

Physical Location & Seq

Genomic Coordinates Reverse (-)

14012945 .. 14013562

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1164200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTTGTTGAAGACTTGTTATAGACCGCGTAGTGAAGCAATCGGCATTCTTTACGACCAAAAGCGCTTATCGGAAGCAGTTCAGTCGCTCAACCACAGAGACAAACCATCTGCTTCCATATGCTCGACCCTCGTGCAGCTTTGCCTTCAGCAACGAGCTTTTGGGCAGGGCAAAGTGGTCCATTCCCACACCAGAGCCTCCGGTTTCGTGCCCGGGCTGTTCATTTGTAACCTTCTTATCGGCTTGTATGCGAAATGTGGGAGAATTTACGATGCCCGGGTGGTGTTTGATGAAATGCCTGAGAGGAATCTGTGTTATTGGAATACTATGATATCTGGGTATGCGAAAGTGAGGCAGCTTGGTGAGGCTAGGAAACTGCTTGATGAAATGCCTCAGAGAGAGAATATTTCTTGGACTGCGATAGTATCGGGGTATGCGAAAGTGGGGCAGCTTGGTGAGGCTAGGAAATTGTTTAATGAAAAGCCTCAGAGAGAGAATCTTTCTTGGACTGTGATGATATCGGGGTGTGTTCGCCATGATTGGCCTAAGGAGGCTTTGCGGTTGTTTAGGATGACGCAGAGAAGCGATAATTCGAAATCTGATAAGTTCAGCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

206

Amino Acids

23.46

Weight (kDa)

9.57

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	103 - 133	3e-06	PPR repeat family
PPR	PF01535	107 - 133	4.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028567)

Species	Orthologous Gene IDs
malus_domestica	MD02G1164200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0104111

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	28
AciI	CCGC	2 cut(s)	26, 559
AcsI	RAATTY	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	131
AfeI	AGCGCT	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	4 cut(s)	139, 158, 358, 451
AluI	AGCT	4 cut(s)	139, 158, 358, 451
Alw26I	GTCTC	1 cut(s)	93
Ama87I	CYCGRG	2 cut(s)	212, 276
Aor51HI	AGCGCT	1 cut(s)	65
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	3 cut(s)	136, 355, 448
ApoI	RAATTY	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	4 cut(s)	213, 214, 277, 278
AsuHPI	GGTGA	2 cut(s)	374, 467
AsuII	TTCGAA	1 cut(s)	593
AvaI	CYCGRG	2 cut(s)	212, 276
AvaII	GGWCC	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	546
BaeGI	GKGCMC	1 cut(s)	213
BauI	CACGAG	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	148, 367, 460
BccI	CCATC	1 cut(s)	115
BcgI	CGANNNNNNTGC	4 cut(s)	66, 100, 115, 149
BcnI	CCSGG	4 cut(s)	213, 214, 277, 278
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	3 cut(s)	369, 462, 616
BfoI	RGCGCY	1 cut(s)	67
BisI	GCNGC	3 cut(s)	137, 356, 449
BlsI	GCNGC	3 cut(s)	138, 357, 450
Bme1390I	CCNGG	4 cut(s)	213, 214, 277, 278
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	2 cut(s)	212, 276
BmgT120I	GGNCC	1 cut(s)	178
BmrFI	CCNGG	4 cut(s)	213, 214, 277, 278
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	17
Bpu14I	TTCGAA	1 cut(s)	593
BpuMI	CCSGG	4 cut(s)	213, 214, 277, 278
BsaJI	CCNNGG	2 cut(s)	212, 276
BsaWI	WCCGGW	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	212, 276
BseGI	GGATG	1 cut(s)	576
BseMII	CTCAG	3 cut(s)	291, 407, 500
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	148, 367, 460
BsgI	GTGCAG	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	544
BsiHKCI	CYCGRG	2 cut(s)	212, 276
BsiSI	CCGG	3 cut(s)	201, 213, 277
BsmAI	GTCTC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	544
BsoBI	CYCGRG	2 cut(s)	212, 276
Bsp119I	TTCGAA	1 cut(s)	593
Bsp1286I	GDGCHC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	26, 559
BspANI	GGCC	1 cut(s)	544
BspCNI	CTCAG	3 cut(s)	292, 406, 499
BspFNI	CGCG	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	212, 276
BssSI	CACGAG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	511
BstBI	TTCGAA	1 cut(s)	593
BstDEI	CTNAG	4 cut(s)	300, 393, 486, 546
BstF5I	GGATG	1 cut(s)	576
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	93
BstSCI	CCNGG	4 cut(s)	211, 212, 275, 276
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	148, 367, 460
BstV2I	GAAGAC	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	576
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	178
Cfr9I	CCCGGG	2 cut(s)	212, 276
CseI	GACGC	2 cut(s)	583, 601
CviAII	CATG	1 cut(s)	536
DdeI	CTNAG	4 cut(s)	300, 393, 486, 546
Eco32I	GATATC	2 cut(s)	333, 519
Eco47I	GGWCC	1 cut(s)	178
Eco47III	AGCGCT	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	546
Eco88I	CYCGRG	2 cut(s)	212, 276
EcoRV	GATATC	2 cut(s)	333, 519
FaeI	CATG	1 cut(s)	539
FaiI	YATR	8 cut(s)	21, 119, 121, 249, 329, 342, 435, 537
FatI	CATG	1 cut(s)	535
FauNDI	CATATG	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	137, 356, 449
FokI	GGATG	1 cut(s)	583
Fsp4HI	GCNGC	3 cut(s)	137, 356, 449
FspBI	CTAG	3 cut(s)	369, 462, 616
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	3 cut(s)	137, 356, 449
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	3 cut(s)	201, 213, 277
HgaI	GACGC	2 cut(s)	583, 601
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	539
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	2 cut(s)	307, 496
HpaII	CCGG	3 cut(s)	201, 213, 277
HphI	GGTGA	2 cut(s)	374, 467
Hpy188I	TCNGA	4 cut(s)	73, 396, 489, 601
HpyAV	CCTTC	2 cut(s)	155, 242
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4V	TGCA	1 cut(s)	136
HpyF3I	CTNAG	4 cut(s)	300, 393, 486, 546
Hsp92II	CATG	1 cut(s)	539
HspAI	GCGC	1 cut(s)	64
LpnPI	CCDG	7 cut(s)	152, 205, 214, 226, 290, 312, 321
Lsp1109I	GCAGC	3 cut(s)	148, 367, 460
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	3 cut(s)	369, 462, 616
MaeIII	GTNAC	1 cut(s)	227
MboII	GAAGA	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	3 cut(s)	264, 467, 589
MnlI	CCTC	9 cut(s)	140, 208, 297, 345, 358, 402, 451, 495, 544
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	1 cut(s)	474
MspI	CCGG	3 cut(s)	201, 213, 277
MspR9I	CCNGG	4 cut(s)	213, 214, 277, 278
Mva1269I	GAATGC	1 cut(s)	45
MvnI	CGCG	1 cut(s)	28
NciI	CCSGG	4 cut(s)	213, 214, 277, 278
NdeI	CATATG	1 cut(s)	119
NlaIII	CATG	1 cut(s)	539
NspV	TTCGAA	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PctI	GAATGC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	307, 496
PkrI	GCNGC	3 cut(s)	138, 357, 450
PspPI	GGNCC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	3 cut(s)	137, 356, 449
Sau96I	GGNCC	1 cut(s)	178
ScrFI	CCNGG	4 cut(s)	213, 214, 277, 278
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	5 cut(s)	141, 160, 234, 360, 453
SfaNI	GCATC	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	593
SinI	GGWCC	1 cut(s)	178
SmaI	CCCGGG	2 cut(s)	214, 278
SrfI	GCCCGGGC	1 cut(s)	214
Sse9I	AATT	3 cut(s)	264, 467, 589
SsiI	CCGC	2 cut(s)	26, 559
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	3 cut(s)	369, 462, 616
StyD4I	CCNGG	4 cut(s)	211, 212, 275, 276
TaaI	ACNGT	1 cut(s)	511
TaqI	TCGA	2 cut(s)	125, 593
TasI	AATT	3 cut(s)	264, 467, 589
TfiI	GAWTC	2 cut(s)	307, 496
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseI	GCWGC	3 cut(s)	136, 355, 448
TspDTI	ATGAA	4 cut(s)	211, 306, 399, 492
TspMI	CCCGGG	2 cut(s)	212, 276
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	264
XmaI	CCCGGG	2 cut(s)	212, 276
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	3 cut(s)	369, 462, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.