MD02G1193000.v1.1

endonuclease activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
18307601 .. 18308402
802 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1193000.v1.1.491

Sequence Viewer

Length: 522 bp
ATGATGGGGGTGCAAGAAAATGCCTTGGGCGACAAGTTTACTTACCCTTTTGTGTTGAAGGCTTGGGCAAGGGAATCGGCTATAGACAAAGGGAGGGAGGTTCATGGTGTGGTTGTGAGAGTTGGGTTTATCGTGTTTGATGGATTCACAATGAAGGATGTTGTTTTCTGGAATACTATGAAAATGGGTTATGCTCGAAACTGGATGGTTTTTGAAGCTTCTGATGGTTTTAGGGAGATGGTGGAAATGGGAGAGTGCTTGAGGGAAAGCCTAAGAAGAACACTGGTGTGGAACACTTTGATATGTGGCTATTCCTTTAACGAGCCTTCAAATGAAGCAATTGATCTTTTCAGGGAAATGTTTTGTTTGCATGCAAAGCCCCATAATTTCATGATTTTAGGCTTCTTGTCTGCTTGTGCACAAATGGGTGCTATTAATATAGGAAATTTGGGTTCGAATAGTCTGGGATATGTTTATTGGTACATCTTTGGTAGACCTGTATGCAAAATGTGGTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

19.99

Weight (kDa)

6.82

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028587)

Species Orthologous Gene IDs
malus_domestica MD02G1193000.v1.1
pyrus_communis pycom02g15650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 493
AcsI RAATTY 1 cut(s) 445
AfaI GTAC 1 cut(s) 482
AgsI TTSAA 3 cut(s) 58, 215, 330
AleI CACNNNNGTG 1 cut(s) 286
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 421
Alw44I GTGCAC 1 cut(s) 417
ApaLI GTGCAC 1 cut(s) 417
ApoI RAATTY 1 cut(s) 445
AseI ATTAAT 1 cut(s) 435
AsuII TTCGAA 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BccI CCATC 4 cut(s) 134, 199, 218, 232
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BfmI CTRYAG 1 cut(s) 81
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 206, 288
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 163, 210
BseNI ACTGG 2 cut(s) 206, 288
BseSI GKGCMC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 421
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 1 cut(s) 343
BspHI TCATGA 1 cut(s) 390
BspT104I TTCGAA 1 cut(s) 455
BsrI ACTGG 2 cut(s) 206, 288
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 24
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 163, 210
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNSI RCATGY 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 421
BtsCI GGATG 2 cut(s) 163, 210
BtsIMutI CAGTG 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 372
CciI TCATGA 1 cut(s) 390
Csp6I GTAC 1 cut(s) 481
CviAII CATG 3 cut(s) 104, 371, 391
CviJI RGCY 8 cut(s) 62, 80, 218, 270, 309, 325, 379, 402
CviKI_1 RGCY 8 cut(s) 62, 80, 218, 270, 309, 325, 379, 402
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 1 cut(s) 272
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 3 cut(s) 107, 374, 394
FatI CATG 3 cut(s) 103, 370, 390
FblI GTMKAC 1 cut(s) 493
FokI GGATG 2 cut(s) 170, 217
Hin1II CATG 3 cut(s) 107, 374, 394
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 2 cut(s) 74, 144
Hpy166II GTNNAC 3 cut(s) 39, 419, 494
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 2 cut(s) 169, 391
Hpy8I GTNNAC 3 cut(s) 39, 419, 494
HpyAV CCTTC 3 cut(s) 52, 148, 336
HpyCH4V TGCA 5 cut(s) 13, 370, 374, 419, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 3 cut(s) 107, 374, 394
Kzo9I GATC 1 cut(s) 343
LpnPI CCDG 6 cut(s) 154, 187, 269, 337, 449, 510
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 1 cut(s) 288
MfeI CAATTG 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 3 cut(s) 339, 385, 445
MnlI CCTC 3 cut(s) 87, 91, 255
MseI TTAA 2 cut(s) 318, 435
MslI CAYNNNNRTG 1 cut(s) 286
MunI CAATTG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeII GATC 1 cut(s) 343
NlaIII CATG 3 cut(s) 107, 374, 394
NspI RCATGY 1 cut(s) 374
NspV TTCGAA 1 cut(s) 455
OliI CACNNNNGTG 1 cut(s) 286
PaeI GCATGC 1 cut(s) 374
PagI TCATGA 1 cut(s) 390
PfeI GAWTC 2 cut(s) 74, 144
PshBI ATTAAT 1 cut(s) 435
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 286
SaqAI TTAA 2 cut(s) 318, 435
Sau3AI GATC 1 cut(s) 343
SduI GDGCHC 1 cut(s) 421
SetI ASST 3 cut(s) 102, 220, 499
SfcI CTRYAG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SphI GCATGC 1 cut(s) 374
Sse9I AATT 3 cut(s) 339, 385, 445
StyI CCWWGG 1 cut(s) 24
TaqI TCGA 2 cut(s) 196, 455
TasI AATT 3 cut(s) 339, 385, 445
TfiI GAWTC 2 cut(s) 74, 144
Tru1I TTAA 2 cut(s) 318, 435
Tru9I TTAA 2 cut(s) 318, 435
TscAI CASTG 1 cut(s) 288
TspDTI ATGAA 5 cut(s) 92, 167, 194, 348, 379
TspRI CASTG 1 cut(s) 288
VneI GTGCAC 1 cut(s) 417
VspI ATTAAT 1 cut(s) 435
XapI RAATTY 1 cut(s) 445
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.