pycom02g15650

endonuclease activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
12543195 .. 12543491
297 bp
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UTR
Exon/CDS
Intron
pycom02g15650.1

Sequence Viewer

Length: 297 bp
ATGAGAGTTGGGTTTGATTTCAATAGGTTTTTGTGTAGTTCTTCGCTGAACTTGGTTTGTGAAAAATTTGAGAGTGTAAGGCAGGTGTTTGATGGATTCACAGTGAAGGATGTTGTTTTCTGGAATACTATGAAAATGTGTTATGTTCGAAACGGGATGGGTTTTGAAGCATCTGATGGTTTTAGGGAGATGGTGGAAGTGGGAGAGGTTAGACTGAATGAAGGTGCAACTTTGGCATTGATATCGACTTGCATATATAGTATCAGAAAACTTGAAATTTGGGAGAGAGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

11.36

Weight (kDa)

5.12

Isoelectric Point (pI)

20.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028587)

Species Orthologous Gene IDs
malus_domestica MD02G1193000.v1.1
pyrus_communis pycom02g15650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 73
Acc36I ACCTGC 1 cut(s) 73
AcsI RAATTY 2 cut(s) 65, 276
AgsI TTSAA 3 cut(s) 22, 167, 275
ApoI RAATTY 2 cut(s) 65, 276
AsuII TTCGAA 1 cut(s) 148
BccI CCATC 4 cut(s) 86, 151, 170, 184
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BfuAI ACCTGC 1 cut(s) 73
BmsI GCATC 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 148
BseGI GGATG 2 cut(s) 115, 162
Bsp119I TTCGAA 1 cut(s) 148
BspHI TCATGA 1 cut(s) 293
BspMI ACCTGC 1 cut(s) 73
BspT104I TTCGAA 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 148
BstF5I GGATG 2 cut(s) 115, 162
BstMWI GCNNNNNNNGC 1 cut(s) 233
BtsCI GGATG 2 cut(s) 115, 162
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 73
CciI TCATGA 1 cut(s) 293
CviAII CATG 1 cut(s) 294
Eco32I GATATC 1 cut(s) 243
EcoRV GATATC 1 cut(s) 243
FaeI CATG 1 cut(s) 297
FaiI YATR 6 cut(s) 131, 144, 254, 256, 258, 295
FatI CATG 1 cut(s) 293
FokI GGATG 2 cut(s) 122, 169
Hin1II CATG 1 cut(s) 297
HinfI GANTC 2 cut(s) 96, 290
Hpy188I TCNGA 2 cut(s) 175, 266
Hpy188III TCNNGA 2 cut(s) 121, 294
HpyAV CCTTC 2 cut(s) 100, 215
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 227, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
Hsp92II CATG 1 cut(s) 297
LpnPI CCDG 2 cut(s) 68, 106
LweI GCATC 1 cut(s) 179
MboII GAAGA 1 cut(s) 33
MluCI AATT 2 cut(s) 65, 276
MnlI CCTC 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 233
NlaIII CATG 1 cut(s) 297
NspV TTCGAA 1 cut(s) 148
PagI TCATGA 1 cut(s) 293
PaqCI CACCTGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 96, 290
SetI ASST 4 cut(s) 29, 87, 210, 226
SfaNI GCATC 1 cut(s) 179
SfuI TTCGAA 1 cut(s) 148
SgeI CNNG 6 cut(s) 64, 95, 133, 166, 261, 284
Sse9I AATT 2 cut(s) 65, 276
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 148, 245
TasI AATT 2 cut(s) 65, 276
TfiI GAWTC 2 cut(s) 96, 290
TscAI CASTG 1 cut(s) 108
TspDTI ATGAA 3 cut(s) 146, 234, 282
TspRI CASTG 1 cut(s) 108
XapI RAATTY 2 cut(s) 65, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.