MD02G1203400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
20302930 .. 20306743
3814 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1203400.v1.1.491

Sequence Viewer

Length: 285 bp
ATGTTGAAGAGTCGGATTGGTGGGAAGCAATTGAGAGGCACATATCATCTTCTAACTGGGTCGTCATCTTCTTTCTTCACTTATGAGCTTTTTGGGTCAAAGGAGTCATCTACTTCTGGGATTTCAGGGCCATATATTTGCGCCTTCGTCCAAGGATTTGCATGTTGTTGTTCTGTCACATCGAAGAGGGTTTCTGTAAGCTTGGGTTTCCTTGGCAGTGGCTTTCACCATCGACATCTACACCTGTGTCTCTCTTCGCTTTCCCACTTCCTCTGGGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.28

Weight (kDa)

9.36

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024366)

Species Orthologous Gene IDs
malus_domestica MD02G1203400.v1.1
pyrus_communis pycom06g09800 pycom14g20260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 7
AluBI AGCT 2 cut(s) 88, 201
AluI AGCT 2 cut(s) 88, 201
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 218
BccI CCATC 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 151, 211
Bse1I ACTGG 1 cut(s) 61
BseDI CCNNGG 2 cut(s) 151, 211
BseNI ACTGG 1 cut(s) 61
BshFI GGCC 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 1 cut(s) 130
BspANI GGCC 1 cut(s) 130
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 151, 211
BssT1I CCWWGG 2 cut(s) 151, 211
Bst6I CTCTTC 3 cut(s) 2, 179, 259
BstHHI GCGC 1 cut(s) 143
BstMAI GTCTC 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 165
BsuRI GGCC 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 128
CviAII CATG 1 cut(s) 162
CviJI RGCY 4 cut(s) 88, 130, 201, 222
CviKI_1 RGCY 4 cut(s) 88, 130, 201, 222
Eam1104I CTCTTC 3 cut(s) 2, 179, 259
EarI CTCTTC 3 cut(s) 2, 179, 259
Eco130I CCWWGG 2 cut(s) 151, 211
EcoT14I CCWWGG 2 cut(s) 151, 211
ErhI CCWWGG 2 cut(s) 151, 211
FaeI CATG 1 cut(s) 165
FaiI YATR 5 cut(s) 43, 84, 133, 135, 163
FatI CATG 1 cut(s) 161
GlaI GCGC 1 cut(s) 142
HaeIII GGCC 1 cut(s) 130
HhaI GCGC 1 cut(s) 143
Hin1II CATG 1 cut(s) 165
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 2 cut(s) 10, 104
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 161
Hsp92II CATG 1 cut(s) 165
HspAI GCGC 1 cut(s) 141
LpnPI CCDG 5 cut(s) 42, 102, 111, 257, 259
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 6 cut(s) 19, 41, 60, 67, 196, 246
MfeI CAATTG 1 cut(s) 29
MluCI AATT 1 cut(s) 29
MlyI GAGTC 2 cut(s) 19, 113
MnlI CCTC 3 cut(s) 29, 180, 281
MunI CAATTG 1 cut(s) 29
NlaIII CATG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 175
NspI RCATGY 1 cut(s) 165
PleI GAGTC 2 cut(s) 18, 112
PpsI GAGTC 2 cut(s) 18, 112
PspPI GGNCC 1 cut(s) 128
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 2 cut(s) 19, 113
SetI ASST 3 cut(s) 90, 203, 246
SgeI CNNG 8 cut(s) 69, 129, 138, 164, 174, 214, 224, 256
Sse9I AATT 1 cut(s) 29
StyI CCWWGG 2 cut(s) 151, 211
TaqI TCGA 2 cut(s) 182, 232
TasI AATT 1 cut(s) 29
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspRI CASTG 1 cut(s) 223
XceI RCATGY 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.