Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0024369

Physical Location & Seq

Genomic Coordinates Reverse (-)

26973031 .. 26974204

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1227800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCAAGTTCAAAGACTTTCACTCCCAAGTTACACCCTCAGTCCACCCAATGTCTCACTATCACAGCAACTTTCCACCAAGCTTTTGAGGTTGAATCCAAGTTCCAAATCGGGTTTTTGCAGTTCCCTCAAAAGGGTGTCGAAATCACCAACTGGTTTAAGAACCCATGGTAAGTTTGTTGCGGTCACGTGTGGAGTGGCACAAGAAGAGGATACAGATGATGGGTTCTATATGAGGAGGTGTGTGGAGCTTGCAAGAACGGCTATCGGGTGCACCAGCCCCAATCCTATGGTGGGTTGTGTTATTGTCAAGGATGGCAAGGTTGTTGGTGAAGGCTTTCACCCAAAAGCTGGCCAGCCGCATGCTGAGGTAAACTTCTTTTCCTCAGTTTTAGTTCCCCTTCTCAATGCATGGATACCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

142

Amino Acids

15.2

Weight (kDa)

9.3

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	73 - 126	5.2e-08	Cytidine and deoxycytidylate deaminase zinc-binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024369)

Species	Orthologous Gene IDs
malus_domestica	MD02G1227800.v1.1
pyrus_communis	pycom07g06850
rosa_multiflora	Rmu_co8295309.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	350
AciI	CCGC	2 cut(s)	182, 359
AcoI	YGGCCR	1 cut(s)	352
AcvI	CACGTG	1 cut(s)	189
AfiI	CCNNNNNNNGG	4 cut(s)	132, 133, 293, 350
AflIII	ACRYGT	1 cut(s)	188
AgeI	ACCGGT	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	11, 94
AluBI	AGCT	3 cut(s)	82, 250, 350
AluI	AGCT	3 cut(s)	82, 250, 350
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	271
AoxI	GGCC	1 cut(s)	352
ApaLI	GTGCAC	1 cut(s)	271
AsiGI	ACCGGT	1 cut(s)	418
Asp700I	GAANNNNTTC	1 cut(s)	336
AsuHPI	GGTGA	3 cut(s)	138, 332, 341
BaeGI	GKGCMC	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	354
BbrPI	CACGTG	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	275
BbvCI	CCTCAGC	1 cut(s)	366
BccI	CCATC	2 cut(s)	215, 308
BceAI	ACGGC	1 cut(s)	276
BciVI	GTATCC	2 cut(s)	205, 408
BcoDI	GTCTC	1 cut(s)	58
BfuI	GTATCC	2 cut(s)	205, 408
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	4 cut(s)	132, 133, 293, 350
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	4 cut(s)	132, 133, 293, 350
BseMII	CTCAG	3 cut(s)	52, 357, 399
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	354
BshTI	ACCGGT	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	419
BslI	CCNNNNNNNGG	4 cut(s)	132, 133, 293, 350
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	2 cut(s)	182, 359
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	3 cut(s)	51, 358, 398
BsrFI	RCCGGY	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	189
BstC8I	GCNNGC	4 cut(s)	252, 352, 356, 363
BstDEI	CTNAG	3 cut(s)	38, 366, 385
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	365
BstSLI	GKGCMC	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	289
BsuI	GTATCC	2 cut(s)	205, 408
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	319
Cac8I	GCNNGC	4 cut(s)	252, 352, 356, 363
Cfr10I	RCCGGY	1 cut(s)	418
CspAI	ACCGGT	1 cut(s)	418
CviAII	CATG	3 cut(s)	167, 362, 411
CviJI	RGCY	8 cut(s)	82, 250, 263, 279, 336, 350, 354, 358
CviKI_1	RGCY	8 cut(s)	82, 250, 263, 279, 336, 350, 354, 358
DdeI	CTNAG	3 cut(s)	38, 366, 385
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	166
Eco72I	CACGTG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	3 cut(s)	170, 365, 414
FaiI	YATR	6 cut(s)	168, 231, 233, 290, 363, 412
FatI	CATG	3 cut(s)	166, 361, 410
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	3 cut(s)	170, 365, 414
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	3 cut(s)	138, 332, 341
Hpy166II	GTNNAC	3 cut(s)	44, 273, 373
Hpy8I	GTNNAC	3 cut(s)	44, 273, 373
HpyAV	CCTTC	2 cut(s)	326, 410
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	5 cut(s)	4, 120, 254, 273, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	3 cut(s)	38, 366, 385
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	170, 365, 414
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	4 cut(s)	138, 289, 336, 368
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	29, 184
MboII	GAAGA	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	275
MlsI	TGGCCA	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	354
MnlI	CCTC	8 cut(s)	47, 81, 137, 202, 228, 231, 361, 394
Mox20I	TGGCCA	1 cut(s)	354
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	260
NcoI	CCATGG	1 cut(s)	166
NlaIII	CATG	3 cut(s)	170, 365, 414
NmuCI	GTSAC	1 cut(s)	184
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	350
PinAI	ACCGGT	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	360
PmaCI	CACGTG	1 cut(s)	189
PmlI	CACGTG	1 cut(s)	189
Ppu21I	YACGTR	1 cut(s)	189
PspCI	CACGTG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	8 cut(s)	84, 92, 191, 242, 252, 324, 352, 372
SphI	GCATGC	1 cut(s)	365
SsiI	CCGC	2 cut(s)	182, 359
StyI	CCWWGG	1 cut(s)	166
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	140
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
Van91I	CCANNNNNTGG	1 cut(s)	350
VneI	GTGCAC	1 cut(s)	271
XceI	RCATGY	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.