Rmu_co8295309.1_g000001

Riboflavin biosynthesis protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8295309.1
Physical Location & Seq
Reverse (-)
1 .. 723
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8295309.1_g000001.1.cds

Sequence Viewer

Length: 369 bp
atgcaagttcaacagctttcactcccaagttatactctctctccacccaatgtctcacaatcaaagcaactctccaccaagcttttgaggttgaatccacattccacatctgggttttgcaattcagcaaaatcgatgtttaagtcaccagcaggtgtaagaaaccatggtggtttggttggggtcaggtgtgaagtagcacaacaagaagatagagacgatgggttttatatgaggaggtgtgtggagcttgcaagaaaggctattggacgtactagccccaatcctatggtcggttgtgttattgtcaaggatgggaaggttgttggtgaaggctttcaccctaaagctggccaaccacatgctgag

Protein Analysis

123

Amino Acids

13.34

Weight (kDa)

9.59

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024369)

Species Orthologous Gene IDs
malus_domestica MD02G1227800.v1.1
pyrus_communis pycom07g06850
rosa_multiflora Rmu_co8295309.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 352
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 3 cut(s) 111, 293, 350
AgsI TTSAA 2 cut(s) 11, 94
AluBI AGCT 4 cut(s) 16, 82, 250, 350
AluI AGCT 4 cut(s) 16, 82, 250, 350
Alw26I GTCTC 2 cut(s) 58, 210
AoxI GGCC 1 cut(s) 352
Asp700I GAANNNNTTC 1 cut(s) 336
AsuHPI GGTGA 3 cut(s) 138, 332, 341
BalI TGGCCA 1 cut(s) 354
BccI CCATC 2 cut(s) 215, 308
BcoDI GTCTC 2 cut(s) 58, 210
BfaI CTAG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 293, 350
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 3 cut(s) 111, 293, 350
BseMII CTCAG 1 cut(s) 357
BseRI GAGGAG 1 cut(s) 250
BshFI GGCC 1 cut(s) 354
BshVI ATCGAT 1 cut(s) 134
BslI CCNNNNNNNGG 3 cut(s) 111, 293, 350
BsmAI GTCTC 2 cut(s) 58, 210
BsmBI CGTCTC 1 cut(s) 210
BsnI GGCC 1 cut(s) 354
Bsp19I CCATGG 1 cut(s) 166
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 358
BspDI ATCGAT 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 252, 352
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 319
BstMAI GTCTC 2 cut(s) 58, 210
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 365
BstXI CCANNNNNNTGG 1 cut(s) 289
Bsu15I ATCGAT 1 cut(s) 134
BsuRI GGCC 1 cut(s) 354
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 319
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 252, 352
ClaI ATCGAT 1 cut(s) 134
Csp6I GTAC 1 cut(s) 273
CviAII CATG 2 cut(s) 167, 362
CviJI RGCY 8 cut(s) 16, 82, 250, 263, 279, 336, 350, 354
CviKI_1 RGCY 8 cut(s) 16, 82, 250, 263, 279, 336, 350, 354
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 1 cut(s) 366
EaeI YGGCCR 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 210
FaeI CATG 2 cut(s) 170, 365
FaiI YATR 6 cut(s) 33, 168, 231, 233, 290, 363
FatI CATG 2 cut(s) 166, 361
FokI GGATG 1 cut(s) 326
FspBI CTAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 354
Hin1II CATG 2 cut(s) 170, 365
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 1 cut(s) 94
HphI GGTGA 3 cut(s) 138, 332, 341
HpyAV CCTTC 2 cut(s) 313, 326
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 4, 120, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 2 cut(s) 170, 365
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 5 cut(s) 96, 138, 162, 172, 336
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 144
MboII GAAGA 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 1 cut(s) 121
MluNI TGGCCA 1 cut(s) 354
MnlI CCTC 3 cut(s) 81, 228, 231
Mox20I TGGCCA 1 cut(s) 354
MroXI GAANNNNTTC 1 cut(s) 336
MscI TGGCCA 1 cut(s) 354
MseI TTAA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 260
NcoI CCATGG 1 cut(s) 166
NlaIII CATG 2 cut(s) 170, 365
NmuCI GTSAC 1 cut(s) 144
NspI RCATGY 1 cut(s) 365
PaqCI CACCTGC 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 94
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 141
Sse9I AATT 1 cut(s) 121
SspMI CTAG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 166
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 134
TasI AATT 1 cut(s) 121
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 144
XceI RCATGY 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.