MD02G1248300.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0028570
Physical Location & Seq
Forward (+)
29904617 .. 29905681
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1248300.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGGATTCTAGGCATGGAAATATTATCATGAGTGTTGTTATGCTTCCATGGTTAGCTCACGGCCACATCTCTCCCTTCTTCGAGCTAGCCAAGAAGCTCAGCGATAGAAATTTTCATATCTTTTTTTGTTCGACGCCTGTAATTCTCAACTCCGTCAAGCCAAAACTTCCTGAAAGATACAGTCATTGCATTGAATTTGTTGAACTACATCTTCCACACGATGTATTTCCAGAACTGGCACCTCACTACCACACCACCAATGGCCTCCCACCCCACCTCATGCCCACCCTAAAAAAGGCTTTGCAAATGGCAAGCCCTTACTTTTCCAACATCCTAAAAACCCTAAACCCTGATTTTCTCATATATGATTTTGTTGTCCCATGGGCACTGTCTCTTGGTTTGGATCAAAATATTCCCACCATCCAATTTTTCATCTTCAGCGCTGTTTCGGTATCATTTCTTTTCCATCGTCTTTTCAAGGGCCCTAGTGTCCGGTTTCCGTTTCCCGCAATCTATCTTCGTGATTACGAGATTAGTAAGTTCAATAGTATGATGCCGCCAGCTTCATCAAATGACAATAGAAAGGATGACGGAGTCCCTCCACTGCAATTCCTTATTACCATTGGTCACTCTTGTGACCTCATTTTGTTAAAGACATTCAGGGAGATTGAAGGAAAATATGTTGATTACCTCTATGAGTTAATGGACAGCAAGGTTGTGCGTCTTGGTCCACTACTCCACGACCCTACTAAGGATCAAGAAGACAAAGATGAAGAAACAGATCACGTCATCAAATGGCTGAACCAACGGGAAACATCTTCGGTTGTGTATATTTCCTTTGGGAGTGAGTACTTTTTATCCAAGGAGGAAATAGAAGAGATAGCTCATGGTTTAGATCTTAGCAAAGTGAGTTTCATTTGGGTTGTTAGGTTTCCTAAGGAAGAGAAAGTTACTAGGGCTAAAGAGGTATTGCCAAAAGGTTTTGTAGAGAGGGTGGGAGAGAGGGGAATGATAGTGGAGGGTTGGGCACCATGTAAGAATATGAGCATAAGTATGAATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

355

Amino Acids

40.82

Weight (kDa)

6.2

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 11 - 245 9.3e-11 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028570)

Species Orthologous Gene IDs
malus_domestica MD02G1248300.v1.1
pyrus_communis pycom02g21270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 238, 1027
AciI CCGC 2 cut(s) 507, 557
AclWI GGATC 2 cut(s) 411, 762
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 2 cut(s) 109, 194
AcuI CTGAAG 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 851
AfeI AGCGCT 1 cut(s) 442
AfiI CCNNNNNNNGG 2 cut(s) 295, 751
AgsI TTSAA 5 cut(s) 194, 203, 478, 544, 671
AjiI CACGTC 1 cut(s) 787
AleI CACNNNNGTG 1 cut(s) 633
AluBI AGCT 5 cut(s) 56, 85, 97, 563, 884
AluI AGCT 5 cut(s) 56, 85, 97, 563, 884
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 2 cut(s) 411, 762
Aor51HI AGCGCT 1 cut(s) 442
AoxI GGCC 3 cut(s) 61, 262, 481
ApaI GGGCCC 1 cut(s) 485
ApoI RAATTY 2 cut(s) 109, 194
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 3 cut(s) 481, 482, 728
AsuNHI GCTAGC 1 cut(s) 85
AvaII GGWCC 1 cut(s) 728
AxyI CCTNAGG 1 cut(s) 936
BaeGI GKGCMC 3 cut(s) 388, 485, 1030
BanI GGYRCC 2 cut(s) 238, 1027
BanII GRGCYC 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 768
BccI CCATC 2 cut(s) 428, 474
BceAI ACGGC 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 4 cut(s) 9, 86, 486, 954
BfoI RGCGCY 1 cut(s) 444
BglII AGATCT 1 cut(s) 895
BisI GCNGC 1 cut(s) 557
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 558
BmcAI AGTACT 1 cut(s) 851
Bme18I GGWCC 1 cut(s) 728
BmgBI CACGTC 1 cut(s) 787
BmgT120I GGNCC 3 cut(s) 481, 482, 728
BmiI GGNNCC 3 cut(s) 240, 483, 1029
BmsI GCATC 1 cut(s) 543
BmtI GCTAGC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 768
Bpu1102I GCTNAGC 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 47, 380, 861
BsaWI WCCGGW 1 cut(s) 492
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 751
Bse1I ACTGG 1 cut(s) 240
Bse21I CCTNAGG 1 cut(s) 936
Bse3DI GCAATG 1 cut(s) 184
BseDI CCNNGG 3 cut(s) 47, 380, 861
BseGI GGATG 3 cut(s) 330, 420, 592
BseLI CCNNNNNNNGG 2 cut(s) 295, 751
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 240
BseSI GKGCMC 3 cut(s) 388, 485, 1030
BshFI GGCC 3 cut(s) 63, 264, 483
BshNI GGYRCC 2 cut(s) 238, 1027
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 2 cut(s) 362, 581
BslI CCNNNNNNNGG 2 cut(s) 295, 751
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 2 cut(s) 362, 581
BsnI GGCC 3 cut(s) 63, 264, 483
Bsp120I GGGCCC 1 cut(s) 481
Bsp1286I GDGCHC 3 cut(s) 388, 485, 1030
Bsp143I GATC 4 cut(s) 403, 754, 781, 895
Bsp1720I GCTNAGC 1 cut(s) 98
Bsp19I CCATGG 2 cut(s) 47, 380
BspACI CCGC 2 cut(s) 507, 557
BspANI GGCC 3 cut(s) 63, 264, 483
BspCNI CTCAG 1 cut(s) 111
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 240, 483, 1029
BspOI GCTAGC 1 cut(s) 89
BspPI GGATC 2 cut(s) 411, 762
BspT107I GGYRCC 2 cut(s) 238, 1027
BsrDI GCAATG 1 cut(s) 184
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 47, 380, 861
BssMI GATC 4 cut(s) 403, 754, 781, 895
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 3 cut(s) 47, 380, 861
Bst4CI ACNGT 2 cut(s) 182, 390
Bst6I CTCTTC 2 cut(s) 870, 936
BstACI GRCGYC 1 cut(s) 134
BstC8I GCNNGC 3 cut(s) 87, 313, 561
BstDEI CTNAG 4 cut(s) 98, 750, 899, 936
BstDSI CCRYGG 2 cut(s) 47, 380
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 3 cut(s) 330, 420, 592
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 4 cut(s) 406, 757, 784, 898
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 4 cut(s) 403, 754, 781, 895
BstSLI GKGCMC 3 cut(s) 388, 485, 1030
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 1 cut(s) 895
BstYI RGATCY 1 cut(s) 895
Bsu36I CCTNAGG 1 cut(s) 936
BsuRI GGCC 3 cut(s) 63, 264, 483
BtgI CCRYGG 2 cut(s) 47, 380
BtrI CACGTC 1 cut(s) 787
BtsCI GGATG 3 cut(s) 330, 420, 592
BtsI GCAGTG 1 cut(s) 602
BtsIMutI CAGTG 2 cut(s) 386, 602
Cac8I GCNNGC 3 cut(s) 87, 313, 561
CciI TCATGA 1 cut(s) 27
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 3 cut(s) 481, 482, 728
CseI GACGC 2 cut(s) 142, 710
Csp6I GTAC 1 cut(s) 850
CviAII CATG 7 cut(s) 14, 28, 48, 280, 381, 887, 1032
CviQI GTAC 1 cut(s) 850
DdeI CTNAG 4 cut(s) 98, 750, 899, 936
DpnI GATC 4 cut(s) 405, 756, 783, 897
DpnII GATC 4 cut(s) 403, 754, 781, 895
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 870, 936
EarI CTCTTC 2 cut(s) 870, 936
Eco130I CCWWGG 3 cut(s) 47, 380, 861
Eco24I GRGCYC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 728
Eco47III AGCGCT 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 421
Eco81I CCTNAGG 1 cut(s) 936
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoO109I RGGNCCY 2 cut(s) 481, 482
EcoT14I CCWWGG 3 cut(s) 47, 380, 861
EcoT38I GRGCYC 1 cut(s) 485
ErhI CCWWGG 3 cut(s) 47, 380, 861
FaeI CATG 7 cut(s) 17, 31, 51, 283, 384, 890, 1035
FaqI GGGAC 2 cut(s) 362, 581
FatI CATG 7 cut(s) 13, 27, 47, 279, 380, 886, 1031
FauI CCCGC 1 cut(s) 514
Fnu4HI GCNGC 1 cut(s) 557
FokI GGATG 3 cut(s) 317, 407, 599
FriOI GRGCYC 1 cut(s) 485
Fsp4HI GCNGC 1 cut(s) 557
FspBI CTAG 4 cut(s) 9, 86, 486, 954
GlaI GCGC 1 cut(s) 442
GluI GCNGC 1 cut(s) 557
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 3 cut(s) 63, 264, 483
HapII CCGG 1 cut(s) 493
HgaI GACGC 2 cut(s) 142, 710
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 7 cut(s) 17, 31, 51, 283, 384, 890, 1035
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HinfI GANTC 3 cut(s) 5, 594, 1057
HpaII CCGG 1 cut(s) 493
Hpy166II GTNNAC 1 cut(s) 731
Hpy188III TCNNGA 5 cut(s) 28, 170, 230, 521, 758
Hpy8I GTNNAC 1 cut(s) 731
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 85, 665
HpyCH4III ACNGT 2 cut(s) 182, 390
HpyCH4IV ACGT 1 cut(s) 786
HpyCH4V TGCA 3 cut(s) 189, 304, 607
HpyF3I CTNAG 4 cut(s) 98, 750, 899, 936
HpySE526I ACGT 1 cut(s) 786
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 7 cut(s) 17, 31, 51, 283, 384, 890, 1035
HspAI GCGC 1 cut(s) 441
Kzo9I GATC 4 cut(s) 403, 754, 781, 895
LpnPI CCDG 8 cut(s) 150, 183, 221, 243, 363, 506, 573, 646
LweI GCATC 1 cut(s) 543
MaeI CTAG 4 cut(s) 9, 86, 486, 954
MaeII ACGT 1 cut(s) 786
MaeIII GTNAC 3 cut(s) 626, 635, 949
MalI GATC 4 cut(s) 405, 756, 783, 897
MboI GATC 4 cut(s) 403, 754, 781, 895
MboII GAAGA 9 cut(s) 70, 203, 427, 509, 773, 785, 810, 887, 953
MflI RGATCY 1 cut(s) 895
MhlI GDGCHC 3 cut(s) 388, 485, 1030
MluCI AATT 5 cut(s) 109, 141, 194, 425, 608
MlyI GAGTC 1 cut(s) 603
MmeI TCCRAC 1 cut(s) 351
MseI TTAA 2 cut(s) 650, 701
MslI CAYNNNNRTG 2 cut(s) 633, 1052
MspI CCGG 1 cut(s) 493
NcoI CCATGG 2 cut(s) 47, 380
NdeII GATC 4 cut(s) 403, 754, 781, 895
NheI GCTAGC 1 cut(s) 85
NlaIII CATG 7 cut(s) 17, 31, 51, 283, 384, 890, 1035
NlaIV GGNNCC 3 cut(s) 240, 483, 1029
NmuCI GTSAC 2 cut(s) 626, 635
OliI CACNNNNGTG 1 cut(s) 633
PagI TCATGA 1 cut(s) 27
PfeI GAWTC 2 cut(s) 5, 1057
PflFI GACNNNGTC 1 cut(s) 593
PkrI GCNGC 1 cut(s) 558
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
PspN4I GGNNCC 3 cut(s) 240, 483, 1029
PspOMI GGGCCC 1 cut(s) 481
PspPI GGNCC 3 cut(s) 481, 482, 728
PsuI RGATCY 1 cut(s) 895
PsyI GACNNNGTC 1 cut(s) 593
RsaI GTAC 1 cut(s) 851
RsaNI GTAC 1 cut(s) 850
RseI CAYNNNNRTG 2 cut(s) 633, 1052
SaqAI TTAA 2 cut(s) 650, 701
SatI GCNGC 1 cut(s) 557
Sau3AI GATC 4 cut(s) 403, 754, 781, 895
Sau96I GGNCC 3 cut(s) 481, 482, 728
ScaI AGTACT 1 cut(s) 851
SchI GAGTC 1 cut(s) 603
SduI GDGCHC 3 cut(s) 388, 485, 1030
SfaNI GCATC 1 cut(s) 543
SinI GGWCC 1 cut(s) 728
SmiMI CAYNNNNRTG 2 cut(s) 633, 1052
Sse9I AATT 5 cut(s) 109, 141, 194, 425, 608
SsiI CCGC 2 cut(s) 507, 557
SspI AATATT 2 cut(s) 22, 412
SspMI CTAG 4 cut(s) 9, 86, 486, 954
StyI CCWWGG 3 cut(s) 47, 380, 861
TaaI ACNGT 2 cut(s) 182, 390
TaiI ACGT 1 cut(s) 789
TaqI TCGA 2 cut(s) 81, 131
TasI AATT 5 cut(s) 109, 141, 194, 425, 608
TatI WGTACW 1 cut(s) 849
TauI GCSGC 1 cut(s) 559
TfiI GAWTC 2 cut(s) 5, 1057
Tru1I TTAA 2 cut(s) 650, 701
Tru9I TTAA 2 cut(s) 650, 701
TscAI CASTG 2 cut(s) 393, 609
TseFI GTSAC 2 cut(s) 626, 635
Tsp45I GTSAC 2 cut(s) 626, 635
TspDTI ATGAA 5 cut(s) 104, 421, 555, 786, 904
TspGWI ACGGA 3 cut(s) 142, 489, 606
TspRI CASTG 2 cut(s) 393, 609
Tth111I GACNNNGTC 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 728
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 2 cut(s) 109, 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XspI CTAG 4 cut(s) 9, 86, 486, 954
ZrmI AGTACT 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.