pycom02g21270

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0028570
Physical Location & Seq
Forward (+)
19451447 .. 19452859
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g21270.1

Sequence Viewer

Length: 1413 bp
ATGGATTCTAGGCATGGAAATAGTATCATGAGTGTTGTTATGCTTCCTTGGTTAGCTCACGGCCACATCTCTCCCTTCCTCGAGCTAGCCAAGAAGCTCAGCGAGAGAAATTTTCATATCTTTTTTTGTTCGACGCCTGTAATTCTCAACTCCGTCAAGCCAAAACTTCCTGGAAGATACAATCATTGCATTGAATTTGTTGAACTACATCTTCCACACGATGTATTTCCAGAACTGGCACCTCACTACCACACCACCAATGGCCTCCCACCCCACCTCATGCCCACCCTAAAAAAGGCTTTGCAAATGGCAAGCCCTTACTTTTCCAACATCCTCAAAACCCTAAACCCTGATTTTCTCATATATGATTTTGTTGTCCCATGGGCACTATCTCTAGGTTTGGATCAAAATATTCCCACCATCCAATTTTTCATCTTCAGCGCTGTTTCGGTATCATTTCTTTTCCATCGTCTCTTCAAGGGCCCTAGTGTCCGGTTTCCGTTTCCCGCAATCTATCTTCGCGATTACGAGATTAGTAAGTTCAATAGTATGATGCCGCCAGCTTCATCAAATGACAATAGAAAGGATGACAGAGTCCCTCCACTGCAATTCCCTATTACCACTGGTCGCTCTTGTGACCTCATTTTGTTAAAGACATTCAGGGAGATTGAAGGAAAATATGTTGATTACCTCTATGAGTTAATGGACAGCAAGATTCTGCTTCTTGGTCCACTGCTCCACGACCCTACTAAGGATCAAGAAGACAAAGATGAAGAAACAGATCACATCATCAAATGGCTGAACAAACGGGAAACATCTTCGGTTGTGTATATTTCCTTTGGGAGTGAGTACTTTTTATCCAAGGAGGAAATAGAAGAGATAGCTCATGGGTTAGAGCTTAGCAAAGTGAGTTTCATTTGGGTTGTTAGGTTTCCTATGGAAGAGAAAATAACTAGGGCTGAAGAGGTATTGCCAAAAGGGTTTGTAGAGAGGGTGGGAGAGAGGGGAATGATAGTGGAGGGTTGGGCACCACAAACAAAGATATTGCAGAATTCTAGCGTCGGTGGATTTCTGAGCCACTGTGGATGGAGCTCTGTACTGGAGAGCATGAAGTTCGGTGTTCCAATTATAGCCATGCCTATGCATCTTGACCAGCCATATAACGCCAGACTAGTAGAGGAGCTGGGTGTTGGTGTGGAGGTCAAGAAAACAGGAAGAGGAGGAGGTTTGCAACGAGAAGAGGTAGCAAAGGTGATCAAAGATGTGATGGAAAACAATATTGGGGAGGTTGTGAGAAGAAAGGCAATGGAACTGAGAGACAACATCGGAAAAAGAGAGGATCGAGAGATAGAGGGGCTGGTTGATGAGTTGGTGCAACTTCGAATTCGTACAGGGAAAGAATCAATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

471

Amino Acids

53.76

Weight (kDa)

6.17

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 10 - 245 1.5e-12 Glycosyltransferase, N-terminal domain
UDPGT PF00201 264 - 426 3.8e-18 UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C PF06722 341 - 424 7.6e-07 Erythromycin biosynthesis protein CIII-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028570)

Species Orthologous Gene IDs
malus_domestica MD02G1248300.v1.1
pyrus_communis pycom02g21270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 238, 1027
AccII CGCG 1 cut(s) 522
AciI CCGC 2 cut(s) 507, 557
AclWI GGATC 3 cut(s) 411, 762, 1347
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 4 cut(s) 109, 194, 1051, 1383
AcuI CTGAAG 2 cut(s) 421, 981
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 3 cut(s) 851, 1098, 1390
AfeI AGCGCT 1 cut(s) 442
AfiI CCNNNNNNNGG 2 cut(s) 295, 751
AgsI TTSAA 5 cut(s) 194, 203, 478, 544, 671
AhlI ACTAGT 1 cut(s) 1171
AjnI CCWGG 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 1263, 1295
AluBI AGCT 8 cut(s) 56, 85, 97, 563, 884, 898, 1092, 1183
AluI AGCT 8 cut(s) 56, 85, 97, 563, 884, 898, 1092, 1183
Alw21I GWGCWC 1 cut(s) 1094
Alw26I GTCTC 2 cut(s) 476, 1311
AlwI GGATC 3 cut(s) 411, 762, 1347
Ama87I CYCGRG 1 cut(s) 80
Aor51HI AGCGCT 1 cut(s) 442
AoxI GGCC 3 cut(s) 61, 262, 481
ApaI GGGCCC 1 cut(s) 485
ApoI RAATTY 4 cut(s) 109, 194, 1051, 1383
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 3 cut(s) 481, 482, 728
AsuHPI GGTGA 1 cut(s) 1264
AsuII TTCGAA 1 cut(s) 1381
AsuNHI GCTAGC 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 1 cut(s) 728
BaeGI GKGCMC 3 cut(s) 388, 485, 1030
BanI GGYRCC 2 cut(s) 238, 1027
BanII GRGCYC 2 cut(s) 485, 1094
BbsI GAAGAC 1 cut(s) 768
Bbv12I GWGCWC 1 cut(s) 1094
BccI CCATC 4 cut(s) 428, 474, 1080, 1261
BceAI ACGGC 1 cut(s) 76
BcgI CGANNNNNNTGC 2 cut(s) 1096, 1130
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 1 cut(s) 1254
BcoDI GTCTC 2 cut(s) 476, 1311
BcuI ACTAGT 1 cut(s) 1171
BfaI CTAG 7 cut(s) 9, 86, 395, 486, 954, 1056, 1172
BfoI RGCGCY 1 cut(s) 444
BisI GCNGC 1 cut(s) 557
BlpI GCTNAGC 2 cut(s) 98, 899
BlsI GCNGC 1 cut(s) 558
BmcAI AGTACT 1 cut(s) 851
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 728
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 481, 482, 728
BmiI GGNNCC 3 cut(s) 240, 483, 1029
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 2 cut(s) 543, 1153
BmtI GCTAGC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 768
BpmI CTGGAG 1 cut(s) 1121
Bpu1102I GCTNAGC 2 cut(s) 98, 899
Bpu14I TTCGAA 1 cut(s) 1381
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 47, 380, 861
BsaWI WCCGGW 1 cut(s) 492
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 751
Bse1I ACTGG 3 cut(s) 240, 628, 1104
Bse3DI GCAATG 2 cut(s) 184, 1311
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 3 cut(s) 47, 380, 861
BseGI GGATG 4 cut(s) 330, 420, 592, 1091
BseLI CCNNNNNNNGG 2 cut(s) 295, 751
BseMI GCAATG 2 cut(s) 184, 1311
BseMII CTCAG 3 cut(s) 112, 1064, 1304
BseNI ACTGG 3 cut(s) 240, 628, 1104
BseRI GAGGAG 3 cut(s) 1193, 1233, 1236
BseSI GKGCMC 3 cut(s) 388, 485, 1030
BseYI CCCAGC 1 cut(s) 1183
Bsh1236I CGCG 1 cut(s) 522
BshFI GGCC 3 cut(s) 63, 264, 483
BshNI GGYRCC 2 cut(s) 238, 1027
BsiHKAI GWGCWC 1 cut(s) 1094
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 2 cut(s) 362, 581
BslI CCNNNNNNNGG 2 cut(s) 295, 751
BsmAI GTCTC 2 cut(s) 476, 1311
BsmBI CGTCTC 1 cut(s) 476
BsmFI GGGAC 2 cut(s) 362, 581
BsnI GGCC 3 cut(s) 63, 264, 483
BsoBI CYCGRG 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 1381
Bsp120I GGGCCC 1 cut(s) 481
Bsp1286I GDGCHC 4 cut(s) 388, 485, 1030, 1094
Bsp143I GATC 5 cut(s) 403, 754, 781, 1254, 1339
Bsp1720I GCTNAGC 2 cut(s) 98, 899
Bsp19I CCATGG 1 cut(s) 380
Bsp68I TCGCGA 1 cut(s) 522
BspACI CCGC 2 cut(s) 507, 557
BspANI GGCC 3 cut(s) 63, 264, 483
BspCNI CTCAG 3 cut(s) 111, 1065, 1305
BspFNI CGCG 1 cut(s) 522
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 240, 483, 1029
BspOI GCTAGC 1 cut(s) 89
BspPI GGATC 3 cut(s) 411, 762, 1347
BspT104I TTCGAA 1 cut(s) 1381
BspT107I GGYRCC 2 cut(s) 238, 1027
BsrDI GCAATG 2 cut(s) 184, 1311
BsrI ACTGG 3 cut(s) 240, 628, 1104
BssECI CCNNGG 3 cut(s) 47, 380, 861
BssMI GATC 5 cut(s) 403, 754, 781, 1254, 1339
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 3 cut(s) 47, 380, 861
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 1082
Bst6I CTCTTC 6 cut(s) 479, 870, 936, 957, 1210, 1233
BstACI GRCGYC 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 1381
BstC8I GCNNGC 3 cut(s) 87, 313, 561
BstDEI CTNAG 5 cut(s) 98, 750, 899, 1073, 1313
BstDSI CCRYGG 1 cut(s) 380
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 4 cut(s) 330, 420, 592, 1091
BstFNI CGCG 1 cut(s) 522
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 5 cut(s) 406, 757, 784, 1257, 1342
BstMAI GTCTC 2 cut(s) 476, 1311
BstMBI GATC 5 cut(s) 403, 754, 781, 1254, 1339
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSLI GKGCMC 3 cut(s) 388, 485, 1030
BstUI CGCG 1 cut(s) 522
BstV2I GAAGAC 1 cut(s) 768
BsuRI GGCC 3 cut(s) 63, 264, 483
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 4 cut(s) 330, 420, 592, 1091
BtsI GCAGTG 2 cut(s) 602, 731
BtsIMutI CAGTG 4 cut(s) 602, 621, 731, 1078
BtuMI TCGCGA 1 cut(s) 522
Cac8I GCNNGC 3 cut(s) 87, 313, 561
CciI TCATGA 1 cut(s) 27
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 3 cut(s) 481, 482, 728
CseI GACGC 2 cut(s) 142, 1048
Csp6I GTAC 3 cut(s) 850, 1097, 1389
CviAII CATG 7 cut(s) 14, 28, 280, 381, 887, 1108, 1135
CviQI GTAC 3 cut(s) 850, 1097, 1389
DdeI CTNAG 5 cut(s) 98, 750, 899, 1073, 1313
DpnI GATC 5 cut(s) 405, 756, 783, 1256, 1341
DpnII GATC 5 cut(s) 403, 754, 781, 1254, 1339
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 6 cut(s) 479, 870, 936, 957, 1210, 1233
EarI CTCTTC 6 cut(s) 479, 870, 936, 957, 1210, 1233
Ecl136II GAGCTC 1 cut(s) 1092
Eco130I CCWWGG 3 cut(s) 47, 380, 861
Eco24I GRGCYC 2 cut(s) 485, 1094
Eco47I GGWCC 1 cut(s) 728
Eco47III AGCGCT 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 1092
Eco57I CTGAAG 2 cut(s) 421, 981
Eco88I CYCGRG 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 1092
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoO109I RGGNCCY 2 cut(s) 481, 482
EcoRI GAATTC 2 cut(s) 1051, 1383
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 3 cut(s) 47, 380, 861
EcoT22I ATGCAT 1 cut(s) 1146
EcoT38I GRGCYC 2 cut(s) 485, 1094
ErhI CCWWGG 3 cut(s) 47, 380, 861
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 7 cut(s) 17, 31, 283, 384, 890, 1111, 1138
FaqI GGGAC 2 cut(s) 362, 581
FatI CATG 7 cut(s) 13, 27, 279, 380, 886, 1107, 1134
FauI CCCGC 1 cut(s) 514
FbaI TGATCA 1 cut(s) 1254
Fnu4HI GCNGC 1 cut(s) 557
FokI GGATG 4 cut(s) 317, 407, 599, 1098
FriOI GRGCYC 2 cut(s) 485, 1094
Fsp4HI GCNGC 1 cut(s) 557
FspBI CTAG 7 cut(s) 9, 86, 395, 486, 954, 1056, 1172
GlaI GCGC 1 cut(s) 442
GluI GCNGC 1 cut(s) 557
GsaI CCCAGC 1 cut(s) 1187
GsuI CTGGAG 1 cut(s) 1121
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 3 cut(s) 63, 264, 483
HapII CCGG 1 cut(s) 493
HgaI GACGC 2 cut(s) 142, 1048
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 7 cut(s) 17, 31, 283, 384, 890, 1111, 1138
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HinfI GANTC 4 cut(s) 5, 594, 715, 1400
HpaII CCGG 1 cut(s) 493
HphI GGTGA 1 cut(s) 1264
Hpy166II GTNNAC 1 cut(s) 731
Hpy188I TCNGA 2 cut(s) 1074, 1328
Hpy188III TCNNGA 7 cut(s) 28, 230, 521, 758, 1148, 1204, 1343
Hpy8I GTNNAC 1 cut(s) 731
Hpy99I CGWCG 2 cut(s) 136, 1064
HpyAV CCTTC 2 cut(s) 85, 665
HpyCH4III ACNGT 1 cut(s) 1082
HpyCH4V TGCA 7 cut(s) 189, 304, 607, 1048, 1144, 1231, 1375
HpyF3I CTNAG 5 cut(s) 98, 750, 899, 1073, 1313
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 7 cut(s) 17, 31, 283, 384, 890, 1111, 1138
HspAI GCGC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 1254
Kzo9I GATC 5 cut(s) 403, 754, 781, 1254, 1339
LmnI GCTCC 3 cut(s) 741, 1089, 1180
LweI GCATC 2 cut(s) 543, 1153
MaeI CTAG 7 cut(s) 9, 86, 395, 486, 954, 1056, 1172
MaeIII GTNAC 1 cut(s) 635
MalI GATC 5 cut(s) 405, 756, 783, 1256, 1341
MboI GATC 5 cut(s) 403, 754, 781, 1254, 1339
MhlI GDGCHC 4 cut(s) 388, 485, 1030, 1094
MluCI AATT 9 cut(s) 109, 141, 194, 425, 608, 1051, 1125, 1383, 1408
MlyI GAGTC 1 cut(s) 603
MmeI TCCRAC 1 cut(s) 351
Mph1103I ATGCAT 1 cut(s) 1146
MseI TTAA 3 cut(s) 650, 701, 1411
MslI CAYNNNNRTG 1 cut(s) 1139
MspI CCGG 1 cut(s) 493
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 522
NcoI CCATGG 1 cut(s) 380
NdeII GATC 5 cut(s) 403, 754, 781, 1254, 1339
NheI GCTAGC 1 cut(s) 85
NlaIII CATG 7 cut(s) 17, 31, 283, 384, 890, 1111, 1138
NlaIV GGNNCC 3 cut(s) 240, 483, 1029
NmuCI GTSAC 1 cut(s) 635
NruI TCGCGA 1 cut(s) 522
NsiI ATGCAT 1 cut(s) 1146
NspV TTCGAA 1 cut(s) 1381
PaeR7I CTCGAG 1 cut(s) 80
PagI TCATGA 1 cut(s) 27
PfeI GAWTC 3 cut(s) 5, 715, 1400
PflFI GACNNNGTC 1 cut(s) 593
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 1 cut(s) 558
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
Psp124BI GAGCTC 1 cut(s) 1094
Psp6I CCWGG 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 1183
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 240, 483, 1029
PspOMI GGGCCC 1 cut(s) 481
PspPI GGNCC 3 cut(s) 481, 482, 728
PspXI VCTCGAGB 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 593
RruI TCGCGA 1 cut(s) 522
RsaI GTAC 3 cut(s) 851, 1098, 1390
RsaNI GTAC 3 cut(s) 850, 1097, 1389
RseI CAYNNNNRTG 1 cut(s) 1139
SacI GAGCTC 1 cut(s) 1094
SaqAI TTAA 3 cut(s) 650, 701, 1411
SatI GCNGC 1 cut(s) 557
Sau3AI GATC 5 cut(s) 403, 754, 781, 1254, 1339
Sau96I GGNCC 3 cut(s) 481, 482, 728
ScaI AGTACT 1 cut(s) 851
SchI GAGTC 1 cut(s) 603
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 4 cut(s) 388, 485, 1030, 1094
SfaNI GCATC 2 cut(s) 543, 1153
Sfr274I CTCGAG 1 cut(s) 80
SfuI TTCGAA 1 cut(s) 1381
SinI GGWCC 1 cut(s) 728
SlaI CTCGAG 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 1139
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SpeI ACTAGT 1 cut(s) 1171
Sse9I AATT 9 cut(s) 109, 141, 194, 425, 608, 1051, 1125, 1383, 1408
SsiI CCGC 2 cut(s) 507, 557
SspI AATATT 2 cut(s) 412, 1279
SspMI CTAG 7 cut(s) 9, 86, 395, 486, 954, 1056, 1172
SstI GAGCTC 1 cut(s) 1094
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 3 cut(s) 47, 380, 861
TaaI ACNGT 1 cut(s) 1082
TaqI TCGA 4 cut(s) 81, 131, 1342, 1381
TasI AATT 9 cut(s) 109, 141, 194, 425, 608, 1051, 1125, 1383, 1408
TatI WGTACW 2 cut(s) 849, 1096
TauI GCSGC 1 cut(s) 559
TfiI GAWTC 3 cut(s) 5, 715, 1400
Tru1I TTAA 3 cut(s) 650, 701, 1411
Tru9I TTAA 3 cut(s) 650, 701, 1411
TscAI CASTG 4 cut(s) 609, 628, 738, 1085
TseFI GTSAC 1 cut(s) 635
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 6 cut(s) 104, 421, 555, 786, 904, 1124
TspGWI ACGGA 2 cut(s) 142, 489
TspRI CASTG 4 cut(s) 609, 628, 738, 1085
Tth111I GACNNNGTC 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 728
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 4 cut(s) 109, 194, 1051, 1383
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 80
XspI CTAG 7 cut(s) 9, 86, 395, 486, 954, 1056, 1172
ZrmI AGTACT 1 cut(s) 851
Zsp2I ATGCAT 1 cut(s) 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.