MD02G1260100.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0022298
Physical Location & Seq
Reverse (-)
31363114 .. 31364903
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1260100.v1.1.491

Sequence Viewer

Length: 414 bp
ATGAAGGGACCGTCAGCGCCGCGGCCTGAGTTCAAGCCAAGTTCGGTCTGCTTGGCGAAGATGGTTCAGAATTTCATCGAAGAAAGCAACGAGAAGCAACCTCCGCCGAAATGTGGACGGAACCGCTGCAATTGCTTTCACGGCAACAGCAATGACAGCTCCGACGACGAGCTCGATATATTCGGTGGAGGTTTCGGTGATTCAATCTCCTCCGGTTTGTTCGGTGGCGACGCCTCAGATATTCTTAAGAGTCTGATTCCATGCGTGAGCGTCTCGGAGAGAAACCTCCTGGCCGATACGGTGAGGATCGTCGAAGCAAACAAGAATCTCAAACAAAAAGACGATTTGAGGAAGATGGTCACCGACGGACTGCAATCCCTCGGCTATGATTCCTCCACCTGCAAATCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

138

Amino Acids

14.82

Weight (kDa)

5.83

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 20 - 137 1.7e-16 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022298)

Species Orthologous Gene IDs
malus_domestica MD02G1260100.v1.1 MD07G1143500.v1.1 MD10G1021100.v1.1
pyrus_communis pycom11g08480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 407
AccII CGCG 1 cut(s) 22
AciI CCGC 4 cut(s) 20, 22, 104, 124
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 1 cut(s) 70
AcyI GRCGYC 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 113
AflII CTTAAG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 34, 204
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 2 cut(s) 159, 172
AluI AGCT 2 cut(s) 159, 172
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 314
AoxI GGCC 2 cut(s) 23, 291
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 70
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 3 cut(s) 209, 313, 352
AvaII GGWCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 113
BccI CCATC 2 cut(s) 55, 349
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 277
BfoI RGCGCY 1 cut(s) 20
BfrI CTTAAG 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 407
BisI GCNGC 3 cut(s) 20, 23, 127
BlsI GCNGC 3 cut(s) 21, 24, 128
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 9, 122
BmrFI CCNGG 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 20, 379
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 20, 379
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 18, 249
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 25, 293
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 277
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 2 cut(s) 25, 293
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 4 cut(s) 20, 22, 104, 124
BspANI GGCC 2 cut(s) 25, 293
BspCNI CTCAG 2 cut(s) 19, 248
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 2 cut(s) 9, 122
BspMI ACCTGC 1 cut(s) 407
BspPI GGATC 1 cut(s) 314
BspTI CTTAAG 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 20, 379
BssMI GATC 1 cut(s) 306
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 2 cut(s) 12, 301
BstACI GRCGYC 1 cut(s) 231
BstAFI CTTAAG 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 27, 235
BstDSI CCRYGG 1 cut(s) 20
BstEII GGTNACC 1 cut(s) 358
BstFNI CGCG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 4 cut(s) 103, 132, 141, 156
BstNI CCWGG 1 cut(s) 290
BstPI GGTNACC 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 288
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 113
BsuRI GGCC 2 cut(s) 25, 293
BtgI CCRYGG 1 cut(s) 20
BveI ACCTGC 1 cut(s) 407
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 8
Cfr42I CCGCGG 1 cut(s) 23
CseI GACGC 2 cut(s) 239, 259
CviAII CATG 1 cut(s) 261
CviJI RGCY 6 cut(s) 25, 37, 159, 172, 293, 384
CviKI_1 RGCY 6 cut(s) 25, 37, 159, 172, 293, 384
DdeI CTNAG 2 cut(s) 27, 235
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 291
EciI GGCGGA 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 172
Eco91I GGTNACC 1 cut(s) 358
EcoICRI GAGCTC 1 cut(s) 172
EcoO65I GGTNACC 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 1 cut(s) 264
FaiI YATR 3 cut(s) 179, 262, 387
FaqI GGGAC 1 cut(s) 21
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 3 cut(s) 20, 23, 127
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 3 cut(s) 20, 23, 127
GlaI GCGC 1 cut(s) 18
GluI GCNGC 3 cut(s) 20, 23, 127
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 2 cut(s) 25, 293
HapII CCGG 1 cut(s) 213
HgaI GACGC 2 cut(s) 239, 259
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 1 cut(s) 264
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 5 cut(s) 200, 250, 256, 325, 389
HpaII CCGG 1 cut(s) 213
HphI GGTGA 3 cut(s) 209, 313, 352
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 5 cut(s) 69, 163, 238, 255, 277
Hpy8I GTNNAC 1 cut(s) 116
Hpy99I CGWCG 5 cut(s) 167, 170, 233, 314, 368
HpyCH4III ACNGT 2 cut(s) 12, 301
HpyCH4V TGCA 3 cut(s) 129, 373, 402
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 132, 141, 156
HpyF3I CTNAG 2 cut(s) 27, 235
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 1 cut(s) 264
HspAI GCGC 1 cut(s) 17
KspI CCGCGG 1 cut(s) 23
Kzo9I GATC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 4 cut(s) 39, 226, 275, 302
Lsp1109I GCAGC 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 358
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 3 cut(s) 70, 92, 364
MfeI CAATTG 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 2 cut(s) 70, 130
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 9 cut(s) 111, 182, 220, 244, 296, 297, 342, 389, 403
MseI TTAA 1 cut(s) 246
MspA1I CMGCKG 2 cut(s) 22, 126
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 290
MunI CAATTG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 4 cut(s) 103, 132, 141, 156
NdeII GATC 1 cut(s) 306
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 2 cut(s) 9, 122
NmeAIII GCCGAG 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 407
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 4 cut(s) 200, 256, 325, 389
PkrI GCNGC 3 cut(s) 21, 24, 128
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 288
PspEI GGTNACC 1 cut(s) 358
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 9, 122
PspPI GGNCC 1 cut(s) 8
SacI GAGCTC 1 cut(s) 174
SacII CCGCGG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 3 cut(s) 20, 23, 127
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 174
SetI ASST 6 cut(s) 103, 161, 174, 193, 288, 401
Sfr303I CCGCGG 1 cut(s) 23
SgrBI CCGCGG 1 cut(s) 23
SinI GGWCC 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 70, 130
SsiI CCGC 4 cut(s) 20, 22, 104, 124
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 12, 301
TaqI TCGA 3 cut(s) 78, 174, 312
TaqII GACCGA 1 cut(s) 34
TasI AATT 2 cut(s) 70, 130
TauI GCSGC 2 cut(s) 22, 25
TfiI GAWTC 4 cut(s) 200, 256, 325, 389
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 17, 64
TspGWI ACGGA 2 cut(s) 133, 381
Vha464I CTTAAG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.