MD10G1021100.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0022298
Physical Location & Seq
Reverse (-)
2601119 .. 2601472
354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1021100.v1.1.491

Sequence Viewer

Length: 354 bp
ATGGTTCAGAATTTCATCGAAGAAAGCAACGAGAAGCAGCCTCCGCAGAAATATGGCCGGAACCGCTGCAATTGCTTTCACGGTAACAGCAATGACAGCTCCGACGACGAGCTCGATATCTTCGGTGGAGGCTTCGGCGATTCAATCTCCTCCGGTTCGTTCGGTGGCGACGCCTCCGATAATTTAAAGAGTCTGATTCCATGCGTGAGCGTCTCGGAGAGAAACCTCCTGGCTGATACGGCGAGGATCGTCGAAGCAAACAAGAATCTCAAACAAAAAGACGATTTGAGGAAGATCGTCGCCGACGTACTGCAATCCCTTGGCTACGATTCCTCCACCTGCAAATCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

118

Amino Acids

12.74

Weight (kDa)

4.9

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 1 - 117 5.1e-17 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022298)

Species Orthologous Gene IDs
malus_domestica MD02G1260100.v1.1 MD07G1143500.v1.1 MD10G1021100.v1.1
pyrus_communis pycom11g08480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 347
Acc36I ACCTGC 1 cut(s) 347
AciI CCGC 2 cut(s) 44, 64
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 1 cut(s) 10
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 309
AgsI TTSAA 1 cut(s) 144
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 2 cut(s) 99, 112
AluI AGCT 2 cut(s) 99, 112
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 254
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 37, 66
ApoI RAATTY 1 cut(s) 10
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 49, 53
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 217
BfuAI ACCTGC 1 cut(s) 347
BisI GCNGC 2 cut(s) 38, 67
BlsI GCNGC 2 cut(s) 39, 68
Bme1390I CCNGG 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 319
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 319
BseMI GCAATG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 2 cut(s) 49, 53
BshFI GGCC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 2 cut(s) 58, 153
BsmAI GTCTC 1 cut(s) 217
BsmBI CGTCTC 1 cut(s) 217
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 246, 294
BspACI CCGC 2 cut(s) 44, 64
BspANI GGCC 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 62
BspMI ACCTGC 1 cut(s) 347
BspPI GGATC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 2 cut(s) 246, 294
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 171
BstKTI GATC 2 cut(s) 249, 297
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 2 cut(s) 246, 294
BstMWI GCNNNNNNNGC 5 cut(s) 43, 63, 72, 96, 239
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 49, 53
BsuRI GGCC 1 cut(s) 57
BveI ACCTGC 1 cut(s) 347
CseI GACGC 2 cut(s) 179, 199
Csp6I GTAC 1 cut(s) 308
CviAII CATG 1 cut(s) 201
CviJI RGCY 7 cut(s) 40, 57, 99, 112, 132, 233, 324
CviKI_1 RGCY 7 cut(s) 40, 57, 99, 112, 132, 233, 324
CviQI GTAC 1 cut(s) 308
DpnI GATC 2 cut(s) 248, 296
DpnII GATC 2 cut(s) 246, 294
DraI TTTAAA 1 cut(s) 186
EaeI YGGCCR 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 114
Eco32I GATATC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 228
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 1 cut(s) 204
FaiI YATR 2 cut(s) 54, 202
FatI CATG 1 cut(s) 200
Fnu4HI GCNGC 2 cut(s) 38, 67
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 38, 67
GluI GCNGC 2 cut(s) 38, 67
HaeIII GGCC 1 cut(s) 57
HapII CCGG 2 cut(s) 58, 153
HgaI GACGC 2 cut(s) 179, 199
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 1 cut(s) 204
HinfI GANTC 5 cut(s) 140, 190, 196, 265, 329
HpaII CCGG 2 cut(s) 58, 153
Hpy188I TCNGA 5 cut(s) 9, 103, 178, 195, 217
Hpy99I CGWCG 6 cut(s) 107, 110, 173, 254, 302, 308
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 69, 313, 342
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 63, 72, 96, 239
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 1 cut(s) 204
Kzo9I GATC 2 cut(s) 246, 294
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 71, 166, 215, 242
Lsp1109I GCAGC 2 cut(s) 49, 53
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 248, 296
MboI GATC 2 cut(s) 246, 294
MboII GAAGA 3 cut(s) 32, 112, 304
MfeI CAATTG 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 3 cut(s) 10, 70, 181
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 8 cut(s) 51, 122, 160, 184, 236, 237, 282, 343
MseI TTAA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 2 cut(s) 58, 153
MspR9I CCNGG 1 cut(s) 230
MunI CAATTG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 5 cut(s) 43, 63, 72, 96, 239
NdeII GATC 2 cut(s) 246, 294
NlaIII CATG 1 cut(s) 204
NlaIV GGNNCC 1 cut(s) 62
PaqCI CACCTGC 1 cut(s) 347
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 303
PfeI GAWTC 4 cut(s) 140, 196, 265, 329
PkrI GCNGC 2 cut(s) 39, 68
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 62
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 38, 67
Sau3AI GATC 2 cut(s) 246, 294
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 1 cut(s) 114
SetI ASST 5 cut(s) 101, 114, 228, 309, 341
Sse9I AATT 3 cut(s) 10, 70, 181
SsiI CCGC 2 cut(s) 44, 64
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 309
TaqI TCGA 4 cut(s) 18, 114, 252, 347
TasI AATT 3 cut(s) 10, 70, 181
TfiI GAWTC 4 cut(s) 140, 196, 265, 329
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseI GCWGC 2 cut(s) 37, 66
TspDTI ATGAA 1 cut(s) 4
XapI RAATTY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.