Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0024359

Physical Location & Seq

Genomic Coordinates Reverse (-)

32611403 .. 32611958

Gene Structure 556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1271500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGCTGGCCTTCAGGTCACTCTGGGGATATCTACACTGCTGTCCTATGTGCCTGTGGAGCTTGGCACAGCGCATCAAGCCGGGGCTTTGACTCTCTTGACACTAATGATCCTTCTCAATCATACCTTGCGTAGGCCATCGGCGTCCCTTCTCAAATCACTACCTCAAGTTGCAAAGACAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko02020 ko04714 map00190 map00860 map01100 map01110 map02020 map04714

Pfam Domains

Protein Families

COX15-CtaA

Protein Analysis

62

Amino Acids

6.44

Weight (kDa)

10.28

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX15-CtaA	PF02628	2 - 37	3.6e-08	Cytochrome oxidase assembly protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024359)

Species	Orthologous Gene IDs
malus_domestica	MD02G1271500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0267421
rosa_samantha	Rh6CG149500

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	103
AcyI	GRCGYC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	2 cut(s)	7, 134
AspLEI	GCGC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	82
BccI	CCATC	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	82
BfaI	CTAG	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	9, 136
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	9, 136
Bsp143I	GATC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	9, 136
BspPI	GGATC	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 77
BstSCI	CCNGG	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	9, 136
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	73
CseI	GACGC	1 cut(s)	132
CviJI	RGCY	6 cut(s)	5, 9, 61, 80, 86, 136
CviKI_1	RGCY	6 cut(s)	5, 9, 61, 80, 86, 136
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	30
FaiI	YATR	2 cut(s)	48, 123
FaqI	GGGAC	1 cut(s)	130
FspBI	CTAG	1 cut(s)	184
GlaI	GCGC	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	9, 136
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	143
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	20, 122, 158
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 77
Hsp92I	GRCGYC	1 cut(s)	143
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	8, 66, 94
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	1 cut(s)	174
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	58, 77
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	82
SetI	ASST	4 cut(s)	18, 63, 128, 166
SfaNI	GCATC	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SspMI	CTAG	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	80
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspRI	CASTG	1 cut(s)	42
XagI	CCTNNNNNAGG	1 cut(s)	130
XspI	CTAG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.