Rh6CG149500

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0024359
Physical Location & Seq
Reverse (-)
19539936 .. 19540325
390 bp
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UTR
Exon/CDS
Intron
Rh6CG149500.1

Sequence Viewer

Length: 228 bp
ATGCACCCTGCAGTTCGATCGTTGATTGGAACTACTGTTCGCATGGCTGGCCTTCAGGTCACACAGGGGATATCTACACTTCTGTCATATGTGCCTGTTGAGCTTGGCACTGCACATCAAGCTGCGGCATTGACTCTCTTCACACTTATGATCCTTCTCAATCACATTGTGAGGAAGCCATCACCATCCCTTCTTAAATCTCTACCTCAAGTAGCAAAGACAATATAA

Protein Analysis

75

Amino Acids

8.02

Weight (kDa)

11.07

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX15-CtaA PF02628 3 - 51 1.5e-07 Cytochrome oxidase assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024359)

Species Orthologous Gene IDs
malus_domestica MD02G1271500.v1.1
rosa_chinensis RchiOBHm_Chr6g0267421
rosa_samantha Rh6CG149500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 125
AclWI GGATC 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 38
AdeI CACNNNGTG 1 cut(s) 169
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 2 cut(s) 103, 122
AluI AGCT 2 cut(s) 103, 122
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 174
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 187, 193
BcgI CGANNNNNNTGC 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
BpuEI CTTGAG 1 cut(s) 192
BseGI GGATG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 20
BshFI GGCC 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 20
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 17, 150
BspACI CCGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 51
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 145
BssMI GATC 2 cut(s) 17, 150
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 2 cut(s) 20, 153
BstMBI GATC 2 cut(s) 17, 150
BstMCI CGRYCG 1 cut(s) 20
BstMWI GCNNNNNNNGC 3 cut(s) 48, 100, 119
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 49
CviAII CATG 1 cut(s) 43
CviJI RGCY 5 cut(s) 47, 51, 103, 122, 178
CviKI_1 RGCY 5 cut(s) 47, 51, 103, 122, 178
DpnI GATC 2 cut(s) 19, 152
DpnII GATC 2 cut(s) 17, 150
DraIII CACNNNGTG 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 72
FaeI CATG 1 cut(s) 46
FaiI YATR 5 cut(s) 44, 88, 90, 149, 226
FatI CATG 1 cut(s) 42
FauNDI CATATG 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 123, 126
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 2 cut(s) 123, 126
GluI GCNGC 2 cut(s) 123, 126
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 1 cut(s) 46
HinfI GANTC 1 cut(s) 133
HphI GGTGA 1 cut(s) 174
HpyAV CCTTC 3 cut(s) 62, 164, 200
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 4, 11, 113
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 100, 119
Hsp92II CATG 1 cut(s) 46
Kzo9I GATC 2 cut(s) 17, 150
LpnPI CCDG 5 cut(s) 21, 33, 41, 50, 108
Lsp1109I GCAGC 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 19, 152
MboI GATC 2 cut(s) 17, 150
MboII GAAGA 1 cut(s) 130
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 2 cut(s) 165, 216
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 48, 100, 119
NdeI CATATG 1 cut(s) 88
NdeII GATC 2 cut(s) 17, 150
NlaIII CATG 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 58
PkrI GCNGC 2 cut(s) 124, 127
Ple19I CGATCG 1 cut(s) 20
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 13
PvuI CGATCG 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 2 cut(s) 17, 150
SchI GAGTC 1 cut(s) 127
SetI ASST 4 cut(s) 60, 105, 124, 208
SfcI CTRYAG 1 cut(s) 9
SgeI CNNG 9 cut(s) 20, 55, 60, 68, 77, 107, 116, 131, 221
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
SsiI CCGC 1 cut(s) 125
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 16
TauI GCSGC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 58
TspRI CASTG 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.