MD02G1277000.v1.1

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0028562
Physical Location & Seq
Reverse (-)
33264499 .. 33266924
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1277000.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGGCTGGATCTGTTATGGGACAAGATTTTCTCTCCGCATCCGTCCAGGGGTTGTGTGACCGGATGGCTTCAAGGGAGTTGCGCGACTTATTCTCCCAAGGGGATCTTGACTACGATTCACTTGACAGATTGAGGGGGAAGCTGTCGACTCTTTGTGCAGTCCTCAACTACGTAAAACAACAGCAAGTGACAAACCCTGCCGTGAGAGACTGGCTCGGAAAGCTTCGAGACGTCGTCTTTGATGTGGAGGACCTACTGGGTGAGATCAACAGTACTAGTACTGCACAAGTTTTACAACGACCAACTGATGGATTAACGACAAAGGTGTTGAACTTCCTCTCTACTTCTTTCAAACTTTGTGGTAATAATCGAGGCGTGAATTGTAGGATTGAAGAGCTATTACAAATCTTAGAACATCTTGCAGAACAGAAAGATGGCTTGCACGACGAAATGCCGGATCTTTGGGATGAGAGACCTGCAAGCTCTTTTCTGTTTGGTGTTGACTACGGATCAGGATCTTCACCCAACAATGAAATTTACGAGCTTAGACACGGGAAAAAGGCTGCTTCAGCAGAATGGCCCTTTTTATTCATTAGCCTCTGCCTAGAGATTTTGTCCGTTGCATGCGATCAGGCTTCCTCTCCAAGTAAGCCCCGGTATGCATTATTTGGTATGTTGCTGGCTATTGTGGGGGTACTCATTTGCGTCTTGGAGTTCATTTACAAAGGTATAAAAGGAAGAGTTGAACTGAGGAGGTGGGGAAAGCTATGGTGGTTTTTTTATCCTCCGCCTCCCTGTTACAAGCCTCTTGGTACCGTCGTTGAAATTTCTGGATTAATCGGTGGCATTGCTCAGTGTGTTACGTCTATAATTCAATACGTCTACTTCTCTCAGCATTTGGATAGTCCTTTCAAAGTCTCCCTTTACCCTGCCATCCTTGTCATATGTTTGATTACTTCAAGATTAAGTAAAGATCGAAGGTGGATTAGAGAAGGGGCAGGTGCCTATAAACTTACAAAGTCCAAAATGGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

38.67

Weight (kDa)

6.89

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 38 - 90 5.7e-12 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028562)

Species Orthologous Gene IDs
malus_domestica MD02G1277000.v1.1
pyrus_communis pycom02g23730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 989
AatII GACGTC 1 cut(s) 234
Acc36I ACCTGC 2 cut(s) 484, 989
Acc65I GGTACC 1 cut(s) 812
AccB1I GGYRCC 2 cut(s) 812, 1001
AccB7I CCANNNNNTGG 1 cut(s) 308
AccI GTMKAC 2 cut(s) 146, 882
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 36, 788
AclWI GGATC 5 cut(s) 16, 111, 465, 517, 523
AcsI RAATTY 2 cut(s) 534, 825
AcuI CTGAAG 1 cut(s) 552
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 4 cut(s) 274, 280, 696, 814
AfiI CCNNNNNNNGG 2 cut(s) 48, 308
AgsI TTSAA 9 cut(s) 72, 331, 352, 392, 746, 824, 875, 913, 960
AhlI ACTAGT 1 cut(s) 275
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 6 cut(s) 142, 223, 397, 483, 544, 766
AluI AGCT 6 cut(s) 142, 223, 397, 483, 544, 766
Alw26I GTCTC 4 cut(s) 201, 222, 466, 922
AlwI GGATC 5 cut(s) 16, 111, 465, 517, 523
AoxI GGCC 1 cut(s) 578
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 2 cut(s) 534, 825
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
AseI ATTAAT 1 cut(s) 836
Asp718I GGTACC 1 cut(s) 812
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 250, 579
AsuC2I CCSGG 1 cut(s) 655
AsuHPI GGTGA 2 cut(s) 272, 513
AvaII GGWCC 1 cut(s) 250
BaeI ACNNNNGTAYC 2 cut(s) 804, 837
BanI GGYRCC 2 cut(s) 812, 1001
BarI GAAGNNNNNNTAC 2 cut(s) 384, 416
BbvI GCAGC 1 cut(s) 550
BccI CCATC 4 cut(s) 58, 302, 428, 941
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 47
BcnI CCSGG 1 cut(s) 655
BcoDI GTCTC 4 cut(s) 201, 222, 466, 922
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 2 cut(s) 276, 605
BfuAI ACCTGC 2 cut(s) 484, 989
BisI GCNGC 1 cut(s) 564
BlsI GCNGC 1 cut(s) 565
BmcAI AGTACT 2 cut(s) 274, 280
Bme1390I CCNGG 2 cut(s) 47, 655
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 250, 579
BmiI GGNNCC 2 cut(s) 814, 1003
BmrFI CCNGG 2 cut(s) 47, 655
BmrI ACTGGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 266
BplI GAGNNNNNCTC 2 cut(s) 198, 230
BpuMI CCSGG 1 cut(s) 655
BsaAI YACGTR 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 514
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 3 cut(s) 46, 97, 653
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 308
Bse1I ACTGG 2 cut(s) 215, 261
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 514
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 46, 97, 653
BseGI GGATG 4 cut(s) 38, 69, 472, 933
BseJI GATNNNNATC 1 cut(s) 514
BseLI CCNNNNNNNGG 2 cut(s) 48, 308
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 3 cut(s) 740, 866, 905
BseNI ACTGG 2 cut(s) 215, 261
BseRI GAGGAG 1 cut(s) 766
BseXI GCAGC 1 cut(s) 550
BsgI GTGCAG 2 cut(s) 177, 267
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 580
BshNI GGYRCC 2 cut(s) 812, 1001
BsiSI CCGG 3 cut(s) 61, 455, 655
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 2 cut(s) 48, 308
BsmAI GTCTC 4 cut(s) 201, 222, 466, 922
BsmBI CGTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 1 cut(s) 580
Bso31I GGTCTC 1 cut(s) 466
Bsp143I GATC 8 cut(s) 8, 103, 264, 457, 509, 515, 628, 973
BspACI CCGC 2 cut(s) 36, 788
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 3 cut(s) 741, 865, 904
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 814, 1003
BspMI ACCTGC 2 cut(s) 484, 989
BspPI GGATC 5 cut(s) 16, 111, 465, 517, 523
BspQI GCTCTTC 1 cut(s) 387
BspT107I GGYRCC 2 cut(s) 812, 1001
BspTNI GGTCTC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 846
BsrI ACTGG 2 cut(s) 215, 261
BssECI CCNNGG 3 cut(s) 46, 97, 653
BssMI GATC 8 cut(s) 8, 103, 264, 457, 509, 515, 628, 973
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 272, 817
Bst6I CTCTTC 2 cut(s) 387, 733
BstACI GRCGYC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 172
BstC8I GCNNGC 4 cut(s) 440, 481, 625, 681
BstDEI CTNAG 5 cut(s) 409, 545, 749, 852, 891
BstF5I GGATG 4 cut(s) 38, 69, 472, 933
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 8 cut(s) 11, 106, 267, 460, 512, 518, 631, 976
BstMAI GTCTC 4 cut(s) 201, 222, 466, 922
BstMBI GATC 8 cut(s) 8, 103, 264, 457, 509, 515, 628, 973
BstMWI GCNNNNNNNGC 2 cut(s) 220, 569
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 2 cut(s) 45, 653
BstSNI TACGTA 1 cut(s) 172
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 550
BstX2I RGATCY 4 cut(s) 8, 103, 457, 515
BstYI RGATCY 4 cut(s) 8, 103, 457, 515
BsuRI GGCC 1 cut(s) 580
BtsCI GGATG 4 cut(s) 38, 69, 472, 933
BtsIMutI CAGTG 1 cut(s) 860
BveI ACCTGC 2 cut(s) 484, 989
Cac8I GCNNGC 4 cut(s) 440, 481, 625, 681
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 250, 579
CseI GACGC 1 cut(s) 694
Csp6I GTAC 4 cut(s) 273, 279, 695, 813
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 1 cut(s) 624
CviQI GTAC 4 cut(s) 273, 279, 695, 813
DdeI CTNAG 5 cut(s) 409, 545, 749, 852, 891
DpnI GATC 8 cut(s) 10, 105, 266, 459, 511, 517, 630, 975
DpnII GATC 8 cut(s) 8, 103, 264, 457, 509, 515, 628, 973
Eam1104I CTCTTC 2 cut(s) 387, 733
EarI CTCTTC 2 cut(s) 387, 733
EciI GGCGGA 1 cut(s) 777
Eco105I TACGTA 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 664
ErhI CCWWGG 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 1 cut(s) 627
FalI AAGNNNNNCTT 4 cut(s) 90, 122, 906, 938
FaqI GGGAC 1 cut(s) 33
FatI CATG 1 cut(s) 623
FauNDI CATATG 1 cut(s) 944
FblI GTMKAC 2 cut(s) 146, 882
Fnu4HI GCNGC 1 cut(s) 564
FokI GGATG 4 cut(s) 25, 76, 479, 920
Fsp4HI GCNGC 1 cut(s) 564
FspBI CTAG 2 cut(s) 276, 605
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 564
HaeIII GGCC 1 cut(s) 580
HapII CCGG 3 cut(s) 61, 455, 655
HgaI GACGC 1 cut(s) 694
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 1 cut(s) 627
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HincII GTYRAC 2 cut(s) 147, 502
HindII GTYRAC 2 cut(s) 147, 502
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 116, 148
HpaII CCGG 3 cut(s) 61, 455, 655
HphI GGTGA 2 cut(s) 272, 513
Hpy166II GTNNAC 3 cut(s) 147, 502, 883
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 5 cut(s) 107, 227, 513, 831, 960
Hpy8I GTNNAC 3 cut(s) 147, 502, 883
Hpy99I CGWCG 3 cut(s) 236, 449, 821
HpyAV CCTTC 2 cut(s) 972, 986
HpyCH4III ACNGT 2 cut(s) 272, 817
HpyCH4IV ACGT 4 cut(s) 171, 231, 863, 879
HpyCH4V TGCA 7 cut(s) 158, 284, 422, 442, 479, 623, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 569
HpyF3I CTNAG 5 cut(s) 409, 545, 749, 852, 891
HpySE526I ACGT 4 cut(s) 171, 231, 863, 879
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 1 cut(s) 627
HspAI GCGC 1 cut(s) 82
KpnI GGTACC 1 cut(s) 816
Kzo9I GATC 8 cut(s) 8, 103, 264, 457, 509, 515, 628, 973
LguI GCTCTTC 1 cut(s) 387
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 1 cut(s) 47
MaeI CTAG 2 cut(s) 276, 605
MaeII ACGT 4 cut(s) 171, 231, 863, 879
MaeIII GTNAC 4 cut(s) 56, 187, 797, 859
MalI GATC 8 cut(s) 10, 105, 266, 459, 511, 517, 630, 975
MboI GATC 8 cut(s) 8, 103, 264, 457, 509, 515, 628, 973
MboII GAAGA 3 cut(s) 404, 510, 750
MflI RGATCY 4 cut(s) 8, 103, 457, 515
MluCI AATT 4 cut(s) 379, 534, 825, 870
MlyI GAGTC 1 cut(s) 142
Mph1103I ATGCAT 1 cut(s) 664
MseI TTAA 4 cut(s) 314, 836, 965, 1036
MspI CCGG 3 cut(s) 61, 455, 655
MspR9I CCNGG 2 cut(s) 47, 655
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 220, 569
NciI CCSGG 1 cut(s) 655
NdeI CATATG 1 cut(s) 944
NdeII GATC 8 cut(s) 8, 103, 264, 457, 509, 515, 628, 973
NlaIII CATG 1 cut(s) 627
NlaIV GGNNCC 2 cut(s) 814, 1003
NmuCI GTSAC 2 cut(s) 56, 187
NsiI ATGCAT 1 cut(s) 664
NspI RCATGY 1 cut(s) 627
PaeI GCATGC 1 cut(s) 627
PaqCI CACCTGC 1 cut(s) 989
PciSI GCTCTTC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 116
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 1 cut(s) 565
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 172
PpuMI RGGWCCY 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 836
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 814, 1003
PspPI GGNCC 2 cut(s) 250, 579
PspPPI RGGWCCY 1 cut(s) 250
PsuI RGATCY 4 cut(s) 8, 103, 457, 515
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 4 cut(s) 274, 280, 696, 814
RsaNI GTAC 4 cut(s) 273, 279, 695, 813
SalI GTCGAC 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 4 cut(s) 314, 836, 965, 1036
SatI GCNGC 1 cut(s) 564
Sau3AI GATC 8 cut(s) 8, 103, 264, 457, 509, 515, 628, 973
Sau96I GGNCC 2 cut(s) 250, 579
ScaI AGTACT 2 cut(s) 274, 280
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 47, 655
SfaNI GCATC 1 cut(s) 47
SinI GGWCC 1 cut(s) 250
SnaBI TACGTA 1 cut(s) 172
SpeI ACTAGT 1 cut(s) 275
SphI GCATGC 1 cut(s) 627
Sse9I AATT 4 cut(s) 379, 534, 825, 870
SsiI CCGC 2 cut(s) 36, 788
SspMI CTAG 2 cut(s) 276, 605
StyD4I CCNGG 2 cut(s) 45, 653
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 2 cut(s) 272, 817
TaiI ACGT 4 cut(s) 174, 234, 866, 882
TaqI TCGA 4 cut(s) 146, 226, 370, 976
TasI AATT 4 cut(s) 379, 534, 825, 870
TatI WGTACW 2 cut(s) 272, 278
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 4 cut(s) 314, 836, 965, 1036
Tru9I TTAA 4 cut(s) 314, 836, 965, 1036
TscAI CASTG 1 cut(s) 860
TseFI GTSAC 2 cut(s) 56, 187
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 2 cut(s) 56, 187
TspDTI ATGAA 3 cut(s) 546, 580, 706
TspGWI ACGGA 3 cut(s) 31, 522, 607
TspRI CASTG 1 cut(s) 860
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 250
VspI ATTAAT 1 cut(s) 836
XapI RAATTY 2 cut(s) 534, 825
XceI RCATGY 1 cut(s) 627
XmiI GTMKAC 2 cut(s) 146, 882
XspI CTAG 2 cut(s) 276, 605
ZraI GACGTC 1 cut(s) 232
ZrmI AGTACT 2 cut(s) 274, 280
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.