pycom02g23730

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0028562
Physical Location & Seq
Reverse (-)
21855612 .. 21857719
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g23730.3

Sequence Viewer

Length: 1011 bp
ATGGCTGGATCTTTCATGGGACAAGATTTTCTCTCCGCATCTGTCCACGTGCTGTGTGACCAGATGGCGTCAAGGGAGTTGCGCGACTTATTCTTCCAAAGGAATCTTGACGACGATTCACTCAACAAACTGGGGGGGAAGCTGTCGACTCTTTGTGCAGTGCTCAACTATGCAAAACAACAGCAAGTTACAAACCCTGCTGTGAGAGACTGGCTTGGAAAGCTTCGAGACGTCGTCTTTGATGTGGAGGACCTACTAGGTAAGATCACCAGTACTAGTAGTACTGCACAAGTTTTACAACGACCAACAGATGGATTGACGACCAAGGTGTTGAACTTCCTCTCCACTTCTTTCAATCTTTGCAATAATAATCGAGGCGTGGATTCTAGGATTGAAGAGTTATTACAAATCTTAGAACATCTTGCAGAACAGAAAGATAGCTTGTTCGACGAAATGGCGGATCTTTGGGATGAGAGACCTGCAAGCTCTTCACCCAACAAGGAAATTTACGAGCCTAGACAGAAGAAAAAGGCTGCTTCAGCAGAATTGACCTTTTTATTCATTAGCCTCTGCCTAGAGATTTTGTCCATTGCATTTGATCAGGCTTCCTCTCCAAGTAAGCCCCATTATGCATTGTTTGGTATGTTGCTGGCTATTGTGGGGGTACTCATTTCCGCCTTGGAGTTCATTTACAAAGGTATAAAAGGAAAAGTTGTACTGAGGAGGTGGGGAAAGCTGTGGTGGTTTTATTATCCTCCGCCTCCCAGTTACAAGCTTTTGGGTACCGTCATTGAAATTTATGGATTAGTCGGTGGCATTGCTCAGTGTGTTTCGTCTATAATTCAATATGTCTACTTCTCTCGGCATTTGGATAGTCCTTTCAAAGTCTCCCTTTTGCCTGCCATCCTTGTCCTATGTTTGATTACTTCAAGATTAAGTGAAGATCGAATGCGGATTAGAGATGGGGCAGGTGGCAGGTCACTAGAAAATTACACCATCCAATCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

37.63

Weight (kDa)

6.9

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028562)

Species Orthologous Gene IDs
malus_domestica MD02G1277000.v1.1
pyrus_communis pycom02g23730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 959
AatII GACGTC 1 cut(s) 234
Acc36I ACCTGC 3 cut(s) 487, 959, 966
Acc65I GGTACC 1 cut(s) 782
AccB1I GGYRCC 1 cut(s) 782
AccB7I CCANNNNNTGG 1 cut(s) 311
AccI GTMKAC 2 cut(s) 146, 852
AccII CGCG 1 cut(s) 84
AciI CCGC 5 cut(s) 36, 458, 675, 758, 952
AclWI GGATC 2 cut(s) 16, 468
AcsI RAATTY 2 cut(s) 504, 795
AcuI CTGAAG 1 cut(s) 522
AcvI CACGTG 1 cut(s) 49
AcyI GRCGYC 2 cut(s) 68, 231
AfaI GTAC 5 cut(s) 274, 283, 666, 717, 784
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 7 cut(s) 334, 355, 395, 794, 845, 883, 930
AhlI ACTAGT 1 cut(s) 275
AloI GAACNNNNNNTCC 2 cut(s) 326, 358
AluBI AGCT 6 cut(s) 142, 223, 441, 486, 736, 775
AluI AGCT 6 cut(s) 142, 223, 441, 486, 736, 775
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 4 cut(s) 201, 222, 469, 892
AlwI GGATC 2 cut(s) 16, 468
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 2 cut(s) 504, 795
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
Asp718I GGTACC 1 cut(s) 782
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 259, 483
AvaII GGWCC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 782
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
BbrPI CACGTG 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 520
BccI CCATC 5 cut(s) 58, 305, 911, 956, 1004
BclI TGATCA 1 cut(s) 598
BcoDI GTCTC 4 cut(s) 201, 222, 469, 892
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 6 cut(s) 257, 276, 387, 516, 575, 983
BfuAI ACCTGC 3 cut(s) 487, 959, 966
BisI GCNGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 535
BmcAI AGTACT 2 cut(s) 274, 283
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 784
BmrI ACTGGG 2 cut(s) 140, 759
BmsI GCATC 1 cut(s) 47
BmuI ACTGGG 2 cut(s) 140, 759
BsaAI YACGTR 1 cut(s) 49
BsaHI GRCGYC 2 cut(s) 68, 231
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 2 cut(s) 324, 678
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 4 cut(s) 135, 215, 270, 765
Bse3DI GCAATG 2 cut(s) 588, 816
BseDI CCNNGG 2 cut(s) 324, 678
BseGI GGATG 3 cut(s) 475, 903, 996
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 2 cut(s) 588, 816
BseMII CTCAG 2 cut(s) 710, 836
BseNI ACTGG 4 cut(s) 135, 215, 270, 765
BseRI GAGGAG 1 cut(s) 736
BseXI GCAGC 1 cut(s) 520
BsgI GTGCAG 2 cut(s) 177, 270
Bsh1236I CGCG 1 cut(s) 84
BshNI GGYRCC 1 cut(s) 782
BsiHKAI GWGCWC 1 cut(s) 165
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 4 cut(s) 201, 222, 469, 892
BsmBI CGTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 33
BsmI GAATGC 1 cut(s) 954
Bso31I GGTCTC 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 5 cut(s) 8, 264, 460, 598, 943
BspACI CCGC 5 cut(s) 36, 458, 675, 758, 952
BspCNI CTCAG 2 cut(s) 711, 835
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 784
BspMI ACCTGC 3 cut(s) 487, 959, 966
BspPI GGATC 2 cut(s) 16, 468
BspQI GCTCTTC 1 cut(s) 493
BspT107I GGYRCC 1 cut(s) 782
BspTNI GGTCTC 1 cut(s) 469
BsrDI GCAATG 2 cut(s) 588, 816
BsrI ACTGG 4 cut(s) 135, 215, 270, 765
BssECI CCNNGG 2 cut(s) 324, 678
BssMI GATC 5 cut(s) 8, 264, 460, 598, 943
BssNI GRCGYC 2 cut(s) 68, 231
BssT1I CCWWGG 2 cut(s) 324, 678
Bst4CI ACNGT 1 cut(s) 787
Bst6I CTCTTC 2 cut(s) 390, 493
BstACI GRCGYC 2 cut(s) 68, 231
BstBAI YACGTR 1 cut(s) 49
BstC8I GCNNGC 3 cut(s) 484, 651, 900
BstDEI CTNAG 3 cut(s) 412, 719, 822
BstF5I GGATG 3 cut(s) 475, 903, 996
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 5 cut(s) 11, 267, 463, 601, 946
BstMAI GTCTC 4 cut(s) 201, 222, 469, 892
BstMBI GATC 5 cut(s) 8, 264, 460, 598, 943
BstMWI GCNNNNNNNGC 2 cut(s) 220, 539
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 520
BstX2I RGATCY 2 cut(s) 8, 460
BstYI RGATCY 2 cut(s) 8, 460
BtsCI GGATG 3 cut(s) 475, 903, 996
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 165, 830
BveI ACCTGC 3 cut(s) 487, 959, 966
Cac8I GCNNGC 3 cut(s) 484, 651, 900
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 250
CseI GACGC 1 cut(s) 57
Csp6I GTAC 5 cut(s) 273, 282, 665, 716, 783
CviAII CATG 1 cut(s) 16
CviQI GTAC 5 cut(s) 273, 282, 665, 716, 783
DdeI CTNAG 3 cut(s) 412, 719, 822
DpnI GATC 5 cut(s) 10, 266, 462, 600, 945
DpnII GATC 5 cut(s) 8, 264, 460, 598, 943
Eam1104I CTCTTC 2 cut(s) 390, 493
EarI CTCTTC 2 cut(s) 390, 493
EciI GGCGGA 3 cut(s) 473, 664, 747
Eco130I CCWWGG 2 cut(s) 324, 678
Eco31I GGTCTC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 522
Eco72I CACGTG 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 324, 678
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 2 cut(s) 324, 678
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 1 cut(s) 19
FaiI YATR 9 cut(s) 17, 171, 630, 644, 701, 801, 839, 849, 916
FalI AAGNNNNNCTT 2 cut(s) 876, 908
FaqI GGGAC 1 cut(s) 33
FatI CATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 598
FblI GTMKAC 2 cut(s) 146, 852
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 3 cut(s) 482, 890, 983
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 6 cut(s) 257, 276, 387, 516, 575, 983
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 534
HgaI GACGC 1 cut(s) 57
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 2 cut(s) 68, 231
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 2 cut(s) 221, 773
HinfI GANTC 4 cut(s) 103, 116, 148, 383
HphI GGTGA 2 cut(s) 259, 483
Hpy166II GTNNAC 3 cut(s) 46, 147, 853
Hpy188III TCNNGA 3 cut(s) 107, 227, 930
Hpy8I GTNNAC 3 cut(s) 46, 147, 853
Hpy99I CGWCG 3 cut(s) 116, 236, 452
HpyCH4III ACNGT 1 cut(s) 787
HpyCH4IV ACGT 2 cut(s) 48, 231
HpyCH4V TGCA 8 cut(s) 158, 173, 287, 363, 425, 482, 593, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 539
HpyF3I CTNAG 3 cut(s) 412, 719, 822
HpySE526I ACGT 2 cut(s) 48, 231
Hsp92I GRCGYC 2 cut(s) 68, 231
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 1 cut(s) 82
KpnI GGTACC 1 cut(s) 786
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 5 cut(s) 8, 264, 460, 598, 943
LguI GCTCTTC 1 cut(s) 493
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 1 cut(s) 47
MaeI CTAG 6 cut(s) 257, 276, 387, 516, 575, 983
MaeII ACGT 2 cut(s) 48, 231
MaeIII GTNAC 4 cut(s) 56, 187, 767, 978
MalI GATC 5 cut(s) 10, 266, 462, 600, 945
MboI GATC 5 cut(s) 8, 264, 460, 598, 943
MboII GAAGA 5 cut(s) 85, 407, 480, 535, 953
MflI RGATCY 2 cut(s) 8, 460
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 5 cut(s) 504, 545, 795, 840, 988
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 9 cut(s) 241, 350, 368, 578, 619, 714, 717, 765, 771
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 1 cut(s) 935
Mva1269I GAATGC 1 cut(s) 954
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 220, 539
NdeII GATC 5 cut(s) 8, 264, 460, 598, 943
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 784
NmeAIII GCCGAG 1 cut(s) 841
NmuCI GTSAC 2 cut(s) 56, 978
NsiI ATGCAT 1 cut(s) 634
PaqCI CACCTGC 1 cut(s) 959
PciSI GCTCTTC 1 cut(s) 493
PctI GAATGC 1 cut(s) 954
PfeI GAWTC 3 cut(s) 103, 116, 383
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 311
PkrI GCNGC 1 cut(s) 535
PleI GAGTC 1 cut(s) 142
PmaCI CACGTG 1 cut(s) 49
PmlI CACGTG 1 cut(s) 49
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
PspCI CACGTG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 784
PspPI GGNCC 1 cut(s) 250
PspPPI RGGWCCY 1 cut(s) 250
PsuI RGATCY 2 cut(s) 8, 460
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 5 cut(s) 274, 283, 666, 717, 784
RsaNI GTAC 5 cut(s) 273, 282, 665, 716, 783
SalI GTCGAC 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 493
SaqAI TTAA 1 cut(s) 935
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 5 cut(s) 8, 264, 460, 598, 943
Sau96I GGNCC 1 cut(s) 250
ScaI AGTACT 2 cut(s) 274, 283
SchI GAGTC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 1 cut(s) 47
SinI GGWCC 1 cut(s) 250
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 5 cut(s) 504, 545, 795, 840, 988
SsiI CCGC 5 cut(s) 36, 458, 675, 758, 952
SspMI CTAG 6 cut(s) 257, 276, 387, 516, 575, 983
StyI CCWWGG 2 cut(s) 324, 678
TaaI ACNGT 1 cut(s) 787
TaiI ACGT 2 cut(s) 51, 234
TaqI TCGA 5 cut(s) 146, 226, 373, 447, 946
TasI AATT 5 cut(s) 504, 545, 795, 840, 988
TatI WGTACW 3 cut(s) 272, 281, 715
TfiI GAWTC 3 cut(s) 103, 116, 383
Tru1I TTAA 1 cut(s) 935
Tru9I TTAA 1 cut(s) 935
TscAI CASTG 2 cut(s) 165, 830
TseFI GTSAC 2 cut(s) 56, 978
TseI GCWGC 1 cut(s) 533
Tsp45I GTSAC 2 cut(s) 56, 978
TspDTI ATGAA 3 cut(s) 4, 550, 676
TspRI CASTG 2 cut(s) 165, 830
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 2 cut(s) 504, 795
XmiI GTMKAC 2 cut(s) 146, 852
XspI CTAG 6 cut(s) 257, 276, 387, 516, 575, 983
ZraI GACGTC 1 cut(s) 232
ZrmI AGTACT 2 cut(s) 274, 283
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.