MD02G1298800.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
35425416 .. 35426690
1275 bp
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UTR
Exon/CDS
Intron
MD02G1298800.v1.1.491

Sequence Viewer

Length: 159 bp
ATGATTGCAGAGCCATTGGAGAGAGGACTTGCTGAGGACATTGAGAATGTATATAAGCTACAGTGTTCGTTTCTGCATTGCAGTGAGCGCTTAAAGGAAAATGTGCTCTTATGGGATATTCTATGTTCAAGTAATTATACAAATGAAGCACTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

6.07

Weight (kDa)

4.68

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022374)

Species Orthologous Gene IDs
malus_domestica MD02G1298800.v1.1
prunus_persica Prupe.7G255600_v2.0.a1
pyrus_communis pycom111g01340 pycom17g24230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfeI AGCGCT 1 cut(s) 89
AgsI TTSAA 1 cut(s) 129
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 108
Aor51HI AGCGCT 1 cut(s) 89
AspLEI GCGC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 108
BbvCI CCTCAGC 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 2 cut(s) 24, 143
BsiHKAI GWGCWC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 25, 144
BsrDI GCAATG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 33, 152
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 59
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 3 cut(s) 68, 88, 149
CfoI GCGC 1 cut(s) 90
CviJI RGCY 2 cut(s) 13, 58
CviKI_1 RGCY 2 cut(s) 13, 58
DdeI CTNAG 2 cut(s) 33, 152
Eco47III AGCGCT 1 cut(s) 89
FaiI YATR 5 cut(s) 52, 54, 112, 124, 138
FspEI CC 7 cut(s) 2, 9, 20, 27, 80, 97, 98
GlaI GCGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 91
HhaI GCGC 1 cut(s) 90
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4V TGCA 3 cut(s) 8, 76, 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 2 cut(s) 33, 152
HspAI GCGC 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 133
MnlI CCTC 2 cut(s) 17, 28
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 2 cut(s) 81, 154
MwoI GCNNNNNNNGC 1 cut(s) 87
RseI CAYNNNNRTG 2 cut(s) 81, 154
SaqAI TTAA 1 cut(s) 92
SduI GDGCHC 1 cut(s) 108
SetI ASST 1 cut(s) 60
SfcI CTRYAG 1 cut(s) 59
SgeI CNNG 2 cut(s) 41, 141
SmiMI CAYNNNNRTG 2 cut(s) 81, 154
Sse9I AATT 1 cut(s) 133
TaaI ACNGT 1 cut(s) 63
TasI AATT 1 cut(s) 133
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 3 cut(s) 68, 88, 156
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 3 cut(s) 68, 88, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.