MD02G1312300.v1.1

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0028576
Physical Location & Seq
Forward (+)
36764169 .. 36766638
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1312300.v1.1.491

Sequence Viewer

Length: 285 bp
ATGAAGTTAGGGCACTTTTTTTTACGTCGCCCCGGGCCTCAAAAATCTCTGGACCGGCCCTGTTTGGCATCATCCGGAGCAGGCACAATGCTACAGAATAATCCCTTGAATGATACTCAGCTCTCAGTTTCCAAGCCAACCCCATTCGATGCTGATCAGAGATACTCGTGTTTGCAGCATGATGGCTTAGTCTCTAGGCGTGAGAAGTCAATGACTCATTTGCAAGAAGATAAGCAACAACTGAGAAGATGCAGTTCTGGCGCCGAATCCCTGGGTTTTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

95

Amino Acids

10.46

Weight (kDa)

9.3

Isoelectric Point (pI)

63.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028576)

Species Orthologous Gene IDs
malus_domestica MD02G1312300.v1.1
pyrus_communis pycom17g27250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 260
AccIII TCCGGA 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 261
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 32
Aor13HI TCCGGA 1 cut(s) 74
AoxI GGCC 2 cut(s) 35, 56
ApeKI GCWGC 1 cut(s) 175
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 3 cut(s) 35, 52, 57
AsuC2I CCSGG 2 cut(s) 33, 34
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 15
BaeI ACNNNNGTAYC 2 cut(s) 154, 187
BanI GGYRCC 1 cut(s) 260
BauI CACGAG 1 cut(s) 166
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 272
BclI TGATCA 1 cut(s) 154
BcnI CCSGG 2 cut(s) 33, 34
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 264
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 3 cut(s) 33, 34, 272
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 3 cut(s) 35, 52, 57
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 3 cut(s) 33, 34, 272
BmsI GCATC 3 cut(s) 77, 139, 239
BpuMI CCSGG 2 cut(s) 33, 34
BsaBI GATNNNNATC 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 4 cut(s) 31, 32, 270, 271
BsaWI WCCGGW 1 cut(s) 74
Bse118I RCCGGY 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 153
BseAI TCCGGA 1 cut(s) 74
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 4 cut(s) 31, 32, 270, 271
BseGI GGATG 1 cut(s) 71
BseJI GATNNNNATC 1 cut(s) 153
BseMII CTCAG 3 cut(s) 131, 138, 233
BseSI GKGCMC 1 cut(s) 15
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 2 cut(s) 37, 58
BshNI GGYRCC 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 3 cut(s) 33, 55, 75
BsmAI GTCTC 1 cut(s) 196
BsnI GGCC 2 cut(s) 37, 58
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 15
Bsp13I TCCGGA 1 cut(s) 74
Bsp143I GATC 1 cut(s) 154
BspANI GGCC 2 cut(s) 37, 58
BspCNI CTCAG 3 cut(s) 130, 137, 234
BspEI TCCGGA 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 4 cut(s) 31, 32, 270, 271
BssMI GATC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 166
Bst2BI CACGAG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 272
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 4 cut(s) 117, 124, 187, 242
BstF5I GGATG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 31, 32, 270
BstSFI CTRYAG 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 37, 58
BtsCI GGATG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 82
CfoI GCGC 1 cut(s) 263
Cfr10I RCCGGY 1 cut(s) 54
Cfr13I GGNCC 3 cut(s) 35, 52, 57
Cfr9I CCCGGG 1 cut(s) 32
CviAII CATG 1 cut(s) 179
CviJI RGCY 5 cut(s) 37, 58, 121, 136, 186
CviKI_1 RGCY 5 cut(s) 37, 58, 121, 136, 186
DdeI CTNAG 4 cut(s) 117, 124, 187, 242
DinI GGCGCC 1 cut(s) 262
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 262
EheI GGCGCC 1 cut(s) 262
FaeI CATG 1 cut(s) 182
FaiI YATR 1 cut(s) 180
FatI CATG 1 cut(s) 178
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 262
GluI GCNGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 2 cut(s) 37, 58
HapII CCGG 3 cut(s) 33, 55, 75
HhaI GCGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 1 cut(s) 182
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HinfI GANTC 2 cut(s) 214, 266
HpaII CCGG 3 cut(s) 33, 55, 75
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 2 cut(s) 50, 75
Hpy99I CGWCG 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 3 cut(s) 175, 223, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 4 cut(s) 117, 124, 187, 242
HpySE526I ACGT 1 cut(s) 25
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 1 cut(s) 182
HspAI GCGC 1 cut(s) 261
KasI GGCGCC 1 cut(s) 260
Kpn2I TCCGGA 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 8 cut(s) 35, 46, 66, 68, 73, 88, 243, 257
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 3 cut(s) 77, 139, 239
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 25
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 239, 258
MhlI GDGCHC 1 cut(s) 15
Mly113I GGCGCC 1 cut(s) 261
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 1 cut(s) 48
MroI TCCGGA 1 cut(s) 74
MspI CCGG 3 cut(s) 33, 55, 75
MspR9I CCNGG 3 cut(s) 33, 34, 272
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 258
NarI GGCGCC 1 cut(s) 261
NciI CCSGG 2 cut(s) 33, 34
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 1 cut(s) 262
PasI CCCWGGG 1 cut(s) 271
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 208
PluTI GGCGCC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 3 cut(s) 35, 52, 57
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 3 cut(s) 35, 52, 57
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 3 cut(s) 33, 34, 272
SduI GDGCHC 1 cut(s) 15
SetI ASST 2 cut(s) 28, 123
SfaNI GCATC 3 cut(s) 77, 139, 239
SfcI CTRYAG 1 cut(s) 92
SfoI GGCGCC 1 cut(s) 262
SinI GGWCC 1 cut(s) 52
SmaI CCCGGG 1 cut(s) 34
SspDI GGCGCC 1 cut(s) 260
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 3 cut(s) 31, 32, 270
TaiI ACGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 147
TfiI GAWTC 1 cut(s) 266
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 52
XmaI CCCGGG 1 cut(s) 32
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.