Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0028511

Physical Location & Seq

Genomic Coordinates Reverse (-)

13964265 .. 13965879

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1137800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAATGCCTTTGAGCTTATCTCTACATCCCAGGGCCTGAATCTCAATAGTCTCTTTGAGAAACAAATGGATCTTGTTAAACGAGAAACAAGGTTCACATCCAAACGTCCTGCAAATGAGATAATTTCTAAAATTGAGGAAGCTGCAGCACCTTTGGGATTTGGGGTAAAGAAAAATAACTTCAAGTTGAAGCTGCAAGGTGAAAAAACGGGACGTAAAGGCCATTTATCCGTTGCAACAGAGATTTTTGAGGTGGCCCCCTCACTCTACATGGTTGAGGTTCGCAAGTCCGGGGGAGACACTCTGGAATTTCACAATTTCTACAAAAACCTGTCGACGGGGCTGAAGGATATAGTCTGGAAATCAGCAGATGAATCAAGGAAGGAAGCAGATGGTGGTGCAGGTGCAAGTGCAGGTGCTGGTGCAAATGCAGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCAGGTGCAGGTGCTCGTGCTGGTGCTGGTGCTGGTGCTGGTGCAGGTGTGTTTGTTGTTGTAACTAATAAGCAGCACTTGGGGTTATATCCTTGTAGTGACCCTGTCATTCAGAATGCGTTATGTACTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007154 GO:0007165 GO:0007584 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009536 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0010107 GO:0010118 GO:0015672 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030001 GO:0031667 GO:0034220 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071704 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

200

Amino Acids

20.52

Weight (kDa)

8.96

Isoelectric Point (pI)

25.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAF	PF03822	1 - 58	2.6e-22	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0028511)

Species	Orthologous Gene IDs
malus_domestica	MD03G1137800.v1.1
rosa_laevigata	RLG00000027774

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	6 cut(s)	392, 404, 422, 458, 464, 500
Acc36I	ACCTGC	6 cut(s)	392, 404, 422, 458, 464, 500
AccI	GTMKAC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	592
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	184, 190
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	3 cut(s)	16, 143, 193
AluI	AGCT	3 cut(s)	16, 143, 193
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	2 cut(s)	56, 291
AlwI	GGATC	1 cut(s)	78
AlwNI	CAGNNNCTG	3 cut(s)	37, 419, 437
AoxI	GGCC	3 cut(s)	34, 220, 255
ApeKI	GCWGC	4 cut(s)	143, 146, 193, 538
ApoI	RAATTY	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	34, 256
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	212
BauI	CACGAG	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	481
BbvI	GCAGC	4 cut(s)	130, 158, 180, 550
BccI	CCATC	1 cut(s)	386
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	56, 291
BfmI	CTRYAG	1 cut(s)	144
BfuAI	ACCTGC	6 cut(s)	392, 404, 422, 458, 464, 500
BisI	GCNGC	4 cut(s)	144, 147, 194, 539
BlsI	GCNGC	4 cut(s)	145, 148, 195, 540
Bme1390I	CCNGG	2 cut(s)	32, 292
BmgT120I	GGNCC	2 cut(s)	34, 256
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	32, 292
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	292
BsaJI	CCNNGG	3 cut(s)	30, 31, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	30, 31, 291
BseGI	GGATG	2 cut(s)	26, 98
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseXI	GCAGC	4 cut(s)	130, 158, 180, 550
BsgI	GTGCAG	5 cut(s)	420, 432, 486, 492, 528
BshFI	GGCC	3 cut(s)	36, 222, 257
BsiHKAI	GWGCWC	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	56, 291
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	2 cut(s)	10, 586
BsnI	GGCC	3 cut(s)	36, 222, 257
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	1 cut(s)	70
BspANI	GGCC	3 cut(s)	36, 222, 257
BspLI	GGNNCC	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	6 cut(s)	392, 404, 422, 458, 464, 500
BspPI	GGATC	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	30, 31, 291
BssMI	GATC	1 cut(s)	70
BssSI	CACGAG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	32
BstF5I	GGATG	2 cut(s)	26, 98
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	2 cut(s)	56, 291
BstMBI	GATC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	30, 290
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	130, 158, 180, 550
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	36, 222, 257
BtsCI	GGATG	2 cut(s)	26, 98
BveI	ACCTGC	6 cut(s)	392, 404, 422, 458, 464, 500
CaiI	CAGNNNCTG	3 cut(s)	37, 419, 437
Cfr13I	GGNCC	2 cut(s)	34, 256
Csp6I	GTAC	1 cut(s)	591
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	7 cut(s)	16, 36, 143, 193, 222, 257, 343
CviKI_1	RGCY	7 cut(s)	16, 36, 143, 193, 222, 257, 343
CviQI	GTAC	1 cut(s)	591
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	274
FaiI	YATR	4 cut(s)	272, 353, 553, 589
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	4 cut(s)	144, 147, 194, 539
FokI	GGATG	2 cut(s)	13, 85
Fsp4HI	GCNGC	4 cut(s)	144, 147, 194, 539
GluI	GCNGC	4 cut(s)	144, 147, 194, 539
HaeIII	GGCC	3 cut(s)	36, 222, 257
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	2 cut(s)	40, 374
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	96, 336
Hpy188I	TCNGA	1 cut(s)	579
Hpy188III	TCNNGA	2 cut(s)	305, 358
Hpy8I	GTNNAC	2 cut(s)	96, 336
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	340, 376
HpyCH4IV	ACGT	2 cut(s)	106, 214
HpySE526I	ACGT	2 cut(s)	106, 214
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	70
Lsp1109I	GCAGC	4 cut(s)	130, 158, 180, 550
MaeII	ACGT	2 cut(s)	106, 214
MaeIII	GTNAC	2 cut(s)	526, 563
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	4 cut(s)	123, 132, 308, 316
MnlI	CCTC	4 cut(s)	130, 244, 271, 271
MseI	TTAA	1 cut(s)	78
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	32, 292
Mva1269I	GAATGC	2 cut(s)	10, 586
MvaI	CCWGG	1 cut(s)	32
NciI	CCSGG	1 cut(s)	292
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	563
PaqCI	CACCTGC	6 cut(s)	392, 404, 422, 458, 464, 500
PasI	CCCWGGG	1 cut(s)	31
PctI	GAATGC	2 cut(s)	10, 586
PfeI	GAWTC	2 cut(s)	40, 374
PflFI	GACNNNGTC	1 cut(s)	569
PkrI	GCNGC	4 cut(s)	145, 148, 195, 540
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	34, 256
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	3 cut(s)	37, 419, 437
PsuI	RGATCY	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	569
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
SalI	GTCGAC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	4 cut(s)	144, 147, 194, 539
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	2 cut(s)	34, 256
ScrFI	CCNGG	2 cut(s)	32, 292
SduI	GDGCHC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	144
Sse9I	AATT	4 cut(s)	123, 132, 308, 316
StyD4I	CCNGG	2 cut(s)	30, 290
TaiI	ACGT	2 cut(s)	109, 217
TaqI	TCGA	1 cut(s)	335
TasI	AATT	4 cut(s)	123, 132, 308, 316
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	2 cut(s)	40, 374
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	4 cut(s)	143, 146, 193, 538
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	2 cut(s)	17, 387
TspGWI	ACGGA	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	569
XapI	RAATTY	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.