Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0028511

Physical Location & Seq

Genomic Coordinates Reverse (-)

15062207 .. 15064556

Gene Structure 2350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027774

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAATGCTTTTGAGCTTATTTCGAGGTCACAGAGTTTCAATCTAGAAAATTTATTTGAGAAGCAGATGGGTCATGTGAAACGAGAAACCCGTTTCACTTCTCAACGCCCTGCAAATGAAATCATGAGTAAGATTGAGGCGACTGCAAAGCCTTTGGGCTTTAATGTTCACAAGAAAAACTACAAGATGAAGTTGCAAGGTGATAAGCATGGAAGGAAGGGTCACCTCTCTGTAGCCACTGAGGTGTTTGAGGTGGCTCCCTCCGTGCACATGGTAGAACTCAGGAAAGCTGGTGGTGACACACTAGAGTTTCACAAGGCAAGTCAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009651 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010555 GO:0010959 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0032879 GO:0033554 GO:0035556 GO:0036211 GO:0042221 GO:0042592 GO:0042594 GO:0043170 GO:0043266 GO:0043269 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051365 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

111

Amino Acids

12.55

Weight (kDa)

9.79

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAF	PF03822	1 - 58	5.8e-23	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0028511)

Species	Orthologous Gene IDs
malus_domestica	MD03G1137800.v1.1
rosa_laevigata	RLG00000027774

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	40
AleI	CACNNNNGTG	1 cut(s)	242
AluBI	AGCT	2 cut(s)	16, 290
AluI	AGCT	2 cut(s)	16, 290
Alw21I	GWGCWC	1 cut(s)	270
Alw44I	GTGCAC	1 cut(s)	266
ApaLI	GTGCAC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	49
AsuHPI	GGTGA	3 cut(s)	212, 215, 308
BaeGI	GKGCMC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	270
BccI	CCATC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	44, 305
BfmI	CTRYAG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	231, 295
BseSI	GKGCMC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	270
BspCNI	CTCAG	2 cut(s)	232, 294
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	240, 281
BstEII	GGTNACC	1 cut(s)	221
BstPI	GGTNACC	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	237
CciI	TCATGA	1 cut(s)	123
CviAII	CATG	4 cut(s)	74, 124, 209, 271
CviJI	RGCY	6 cut(s)	16, 151, 159, 236, 257, 290
CviKI_1	RGCY	6 cut(s)	16, 151, 159, 236, 257, 290
DdeI	CTNAG	2 cut(s)	240, 281
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
FaeI	CATG	4 cut(s)	77, 127, 212, 274
FaiI	YATR	4 cut(s)	75, 125, 210, 272
FatI	CATG	4 cut(s)	73, 123, 208, 270
FspBI	CTAG	2 cut(s)	44, 305
Hin1II	CATG	4 cut(s)	77, 127, 212, 274
HincII	GTYRAC	1 cut(s)	326
HindII	GTYRAC	1 cut(s)	326
HphI	GGTGA	3 cut(s)	212, 215, 308
Hpy166II	GTNNAC	3 cut(s)	169, 268, 326
Hpy188III	TCNNGA	3 cut(s)	44, 124, 283
Hpy8I	GTNNAC	3 cut(s)	169, 268, 326
HpyAV	CCTTC	2 cut(s)	207, 211
HpyCH4V	TGCA	4 cut(s)	113, 146, 196, 268
HpyF3I	CTNAG	2 cut(s)	240, 281
Hsp92II	CATG	4 cut(s)	77, 127, 212, 274
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	3 cut(s)	123, 268, 276
MaeI	CTAG	2 cut(s)	44, 305
MaeIII	GTNAC	3 cut(s)	27, 221, 296
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	6 cut(s)	18, 130, 235, 236, 244, 271
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	242
Mva1269I	GAATGC	1 cut(s)	10
NlaIII	CATG	4 cut(s)	77, 127, 212, 274
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	3 cut(s)	27, 221, 296
OliI	CACNNNNGTG	1 cut(s)	242
PagI	TCATGA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	88
PctI	GAATGC	1 cut(s)	10
PspEI	GGTNACC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	7 cut(s)	18, 29, 202, 228, 246, 255, 292
SfcI	CTRYAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	49
SspMI	CTAG	2 cut(s)	44, 305
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	3 cut(s)	27, 221, 296
Tsp45I	GTSAC	3 cut(s)	27, 221, 296
TspDTI	ATGAA	3 cut(s)	17, 132, 203
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	244
VneI	GTGCAC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	49
XbaI	TCTAGA	1 cut(s)	43
XspI	CTAG	2 cut(s)	44, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.