Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0024326

Physical Location & Seq

Genomic Coordinates Reverse (-)

18165899 .. 18170695

Gene Structure 4797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1155900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGGTTTTTGCTTAAGGAAGCGCTCAATAGGCTGTGCGGCGCCAATCAGTGGGCTTACGCTGTCTTCTGGAAGATCGGCTGCCAGAACCCTAAACTATTAATTTGGGAAGAATGTCATTACGAACCATCAGTATCTTCTCTACCTAAACGCAATGCTGAAACTGAAAGAGCTGAATTACCATTCGGAGAGTGGGAGGGATGCTGGGTTTCTTCTAAAGTGTGCTCCTCTTCTAGTGGCATTCAACAAGAGGAAAGAGTGTCCACACTTATTAACACAATGATGATGGATAAACCGTTTAACATAGTGGGTGAAGGGATAGTTGGACGAGCTGCATTTACGGGGAACCATCAATGGATTGTATCAGGCAATTACAGAAAAGATGCCCATCCACCAGAGTCCCAAAGCTCGGATAAAGGAGGGGGAGGGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010479 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

145

Amino Acids

16.04

Weight (kDa)

6.3

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	5 - 128	2.2e-20	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024326)

Species	Orthologous Gene IDs
malus_domestica	MD03G1155900.v1.1
pyrus_communis	pycom03g11010
rosa_multiflora	Rmu_co8267463.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	51
AciI	CCGC	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	42
AfeI	AGCGCT	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	51, 409
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	3 cut(s)	173, 332, 408
AluI	AGCT	3 cut(s)	173, 332, 408
Alw21I	GWGCWC	1 cut(s)	227
Aor51HI	AGCGCT	1 cut(s)	24
ApeKI	GCWGC	2 cut(s)	81, 332
AseI	ATTAAT	1 cut(s)	101
AspLEI	GCGC	2 cut(s)	25, 44
AsuHPI	GGTGA	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	68, 319
BccI	CCATC	4 cut(s)	136, 280, 357, 396
BfaI	CTAG	1 cut(s)	234
BfoI	RGCGCY	2 cut(s)	26, 45
BfrI	CTTAAG	1 cut(s)	14
BisI	GCNGC	3 cut(s)	40, 82, 333
BlsI	GCNGC	3 cut(s)	41, 83, 334
BmiI	GGNNCC	2 cut(s)	43, 347
BmsI	GCATC	2 cut(s)	191, 373
BpiI	GAAGAC	1 cut(s)	58
BsaBI	GATNNNNATC	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 409
Bse3DI	GCAATG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	387
BseGI	GGATG	2 cut(s)	206, 388
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	51, 409
BseMI	GCAATG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	68, 319
BseYI	CCCAGC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	51, 409
BsmFI	GGGAC	1 cut(s)	385
BsmI	GAATGC	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	43, 347
BspT107I	GGYRCC	1 cut(s)	41
BspTI	CTTAAG	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	160
BssMI	GATC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	235
BstACI	GRCGYC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	14
BstF5I	GGATG	2 cut(s)	206, 388
BstH2I	RGCGCY	2 cut(s)	26, 45
BstHHI	GCGC	2 cut(s)	25, 44
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	68, 319
BstV2I	GAAGAC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	206, 388
BtsIMutI	CAGTG	1 cut(s)	56
CfoI	GCGC	2 cut(s)	25, 44
CviJI	RGCY	6 cut(s)	34, 56, 81, 173, 332, 408
CviKI_1	RGCY	6 cut(s)	34, 56, 81, 173, 332, 408
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco47III	AGCGCT	1 cut(s)	24
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaiI	YATR	1 cut(s)	305
FaqI	GGGAC	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	40, 82, 333
FokI	GGATG	2 cut(s)	213, 375
Fsp4HI	GCNGC	3 cut(s)	40, 82, 333
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	2 cut(s)	24, 43
GluI	GCNGC	3 cut(s)	40, 82, 333
GsaI	CCCAGC	1 cut(s)	208
HaeII	RGCGCY	2 cut(s)	26, 45
HhaI	GCGC	2 cut(s)	25, 44
Hin1I	GRCGYC	1 cut(s)	42
Hin6I	GCGC	2 cut(s)	23, 42
HinP1I	GCGC	2 cut(s)	23, 42
HinfI	GANTC	1 cut(s)	398
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	2 cut(s)	188, 412
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
Hsp92I	GRCGYC	1 cut(s)	42
HspAI	GCGC	2 cut(s)	23, 42
KasI	GGCGCC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	5 cut(s)	55, 98, 190, 351, 408
Lsp1109I	GCAGC	2 cut(s)	68, 319
LweI	GCATC	2 cut(s)	191, 373
MaeI	CTAG	1 cut(s)	234
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	6 cut(s)	58, 85, 122, 129, 204, 222
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	3 cut(s)	102, 176, 370
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	5 cut(s)	190, 238, 244, 413, 419
MseI	TTAA	4 cut(s)	15, 101, 273, 300
MslI	CAYNNNNRTG	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	31
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	1 cut(s)	75
NlaIV	GGNNCC	2 cut(s)	43, 347
PctI	GAATGC	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	41, 83, 334
PleI	GAGTC	1 cut(s)	406
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	43, 347
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	4 cut(s)	15, 101, 273, 300
SatI	GCNGC	3 cut(s)	40, 82, 333
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	4 cut(s)	148, 175, 334, 410
SfaNI	GCATC	2 cut(s)	191, 373
SfoI	GGCGCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	102, 176, 370
SsiI	CCGC	1 cut(s)	39
SspDI	GGCGCC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	297
TasI	AATT	3 cut(s)	102, 176, 370
TauI	GCSGC	1 cut(s)	42
Tru1I	TTAA	4 cut(s)	15, 101, 273, 300
Tru9I	TTAA	4 cut(s)	15, 101, 273, 300
TscAI	CASTG	1 cut(s)	56
TseI	GCWGC	2 cut(s)	81, 332
TspRI	CASTG	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	51
Vha464I	CTTAAG	1 cut(s)	14
VspI	ATTAAT	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	189
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.