Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0024326

Physical Location & Seq

Genomic Coordinates Reverse (-)

10467785 .. 10469123

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g11010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGGTTTTTGCTTAAGGAAGTGCTCAAGAGGCTGTGCGGCGCCAATCAGTGGGCTTACGCTGTCTTCTGGAAGATCGGCTGCCAGAACCCTAAACTATTAATTTGGGAAGAATGTCATTACGAACCATCAGTATCTTCTCTACCTAAACGCAATGCTGGAACTGCTGAATTACCATTTGGAGAGTGGGAGGGATGCTGGGTTTCTTCTAAAGTGTGCTCCTCTTCTAGTGGGATTCAACAAGGGGAAAGAGTGTCCTCACTTATTAACACAATGATGATGGATAAACCGTTTAACATAGTGGGTGAAGGGATGGTTGGACGAGCTGCATTTACGGGGAATCATCAATGGATTTTATCAGGCAATTACAGAAAAGATGCCCATCCACCAGAGGTATATATTGGTATTTCTAATTACCTCATTTTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010479 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

144

Amino Acids

16.05

Weight (kDa)

7.63

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024326)

Species	Orthologous Gene IDs
malus_domestica	MD03G1155900.v1.1
pyrus_communis	pycom03g11010
rosa_multiflora	Rmu_co8267463.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	51
AciI	CCGC	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	51
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	4 cut(s)	162, 194, 300, 332
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw21I	GWGCWC	2 cut(s)	27, 221
ApeKI	GCWGC	2 cut(s)	81, 326
AseI	ATTAAT	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	2 cut(s)	27, 221
BbvI	GCAGC	2 cut(s)	68, 313
BccI	CCATC	4 cut(s)	136, 274, 307, 390
BfaI	CTAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	14
BisI	GCNGC	3 cut(s)	40, 82, 327
BlsI	GCNGC	3 cut(s)	41, 83, 328
BmiI	GGNNCC	1 cut(s)	43
BmsI	GCATC	2 cut(s)	185, 367
BpiI	GAAGAC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	381
BseGI	GGATG	3 cut(s)	200, 318, 382
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	68, 313
BseYI	CCCAGC	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	27, 221
BslI	CCNNNNNNNGG	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	27, 221
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	41
BspTI	CTTAAG	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	160
BssMI	GATC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	14
BstF5I	GGATG	3 cut(s)	200, 318, 382
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 164
BstV1I	GCAGC	2 cut(s)	68, 313
BstV2I	GAAGAC	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	200, 318, 382
BtsIMutI	CAGTG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	44
CviJI	RGCY	4 cut(s)	34, 56, 81, 326
CviKI_1	RGCY	4 cut(s)	34, 56, 81, 326
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaiI	YATR	5 cut(s)	299, 397, 399, 428, 430
Fnu4HI	GCNGC	3 cut(s)	40, 82, 327
FokI	GGATG	3 cut(s)	207, 325, 369
Fsp4HI	GCNGC	3 cut(s)	40, 82, 327
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	40, 82, 327
GsaI	CCCAGC	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	45
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	235, 340
HphI	GGTGA	1 cut(s)	317
Hpy188III	TCNNGA	2 cut(s)	28, 70
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 164
Hsp92I	GRCGYC	1 cut(s)	42
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	55, 98, 144, 184, 345, 402
Lsp1109I	GCAGC	2 cut(s)	68, 313
LweI	GCATC	2 cut(s)	185, 367
MaeI	CTAG	1 cut(s)	228
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	6 cut(s)	58, 85, 122, 129, 198, 216
MhlI	GDGCHC	2 cut(s)	27, 221
MluCI	AATT	4 cut(s)	102, 170, 364, 412
Mly113I	GGCGCC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	24, 184, 232, 268, 385, 428
MseI	TTAA	4 cut(s)	15, 101, 267, 294
MslI	CAYNNNNRTG	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	31, 164
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	235, 340
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	41, 83, 328
PluTI	GGCGCC	1 cut(s)	45
PshBI	ATTAAT	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	4 cut(s)	15, 101, 267, 294
SatI	GCNGC	3 cut(s)	40, 82, 327
Sau3AI	GATC	1 cut(s)	75
SduI	GDGCHC	2 cut(s)	27, 221
SetI	ASST	4 cut(s)	148, 328, 396, 420
SfaNI	GCATC	2 cut(s)	185, 367
SfoI	GGCGCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	14, 26
SmoI	CTYRAG	2 cut(s)	14, 26
Sse9I	AATT	4 cut(s)	102, 170, 364, 412
SsiI	CCGC	1 cut(s)	39
SspDI	GGCGCC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	291
TasI	AATT	4 cut(s)	102, 170, 364, 412
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	235, 340
Tru1I	TTAA	4 cut(s)	15, 101, 267, 294
Tru9I	TTAA	4 cut(s)	15, 101, 267, 294
TscAI	CASTG	1 cut(s)	56
TseI	GCWGC	2 cut(s)	81, 326
TspRI	CASTG	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	51
Vha464I	CTTAAG	1 cut(s)	14
VspI	ATTAAT	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.