Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0024276

Physical Location & Seq

Genomic Coordinates Forward (+)

27443278 .. 27443733

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1201000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGTTTGATCCTGCAGAGAACAATCGTCTTCCTCTGAGAAAATCGTTCCGTGCATGTCCTTCGAGACGCCCTGTTGTTATTCCCAACATCGACCTCGTCGATTATGCCTATCAATTCGAGTGGTCTATACCATTCATCAAGCTTTGGCGACTTGAAACTTTTCACTCGAGCTTTGGCGACTGGAAGCTTTGGTCTATACCATTCACTTCCTTTGTCCGATTAGATGCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0019752 GO:0031323 GO:0034641 GO:0042558 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044030 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051186 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

78

Amino Acids

9.27

Weight (kDa)

9.03

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024276)

Species	Orthologous Gene IDs
malus_domestica	MD03G1201000.v1.1 MD15G1073100.v1.1
pyrus_communis	pycom13g27910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	2
AcyI	GRCGYC	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	3 cut(s)	142, 171, 187
AluI	AGCT	3 cut(s)	142, 171, 187
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	2
Ama87I	CYCGRG	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	159
AvaI	CYCGRG	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	20
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BcoDI	GTCTC	1 cut(s)	58
BfmI	CTRYAG	1 cut(s)	12
BmeT110I	CYCGRG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	58
BsmBI	CGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	1 cut(s)	2
BsrI	ACTGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	7
BssNI	GRCGYC	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	7
BstNSI	RCATGY	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	20
CseI	GACGC	1 cut(s)	75
CspCI	CAANNNNNGTGG	2 cut(s)	101, 136
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	3 cut(s)	142, 171, 187
CviKI_1	RGCY	3 cut(s)	142, 171, 187
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	1 cut(s)	57
FaiI	YATR	4 cut(s)	55, 105, 128, 197
FatI	CATG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	57
HindIII	AAGCTT	2 cut(s)	140, 185
Hpy188I	TCNGA	2 cut(s)	36, 218
Hpy188III	TCNNGA	1 cut(s)	63
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	14, 53
HpyF3I	CTNAG	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	3 cut(s)	24, 84, 166
LweI	GCATC	1 cut(s)	214
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	20
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	2 cut(s)	42, 104
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	1 cut(s)	232
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	57
NspI	RCATGY	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	95
PspXI	VCTCGAGB	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	232
Sau3AI	GATC	1 cut(s)	7
SetI	ASST	4 cut(s)	96, 144, 173, 189
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	166
SlaI	CTCGAG	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	1 cut(s)	113
TaqI	TCGA	5 cut(s)	62, 90, 99, 117, 167
TasI	AATT	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	232
Tru9I	TTAA	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	38
Tth111I	GACNNNGTC	1 cut(s)	95
XceI	RCATGY	1 cut(s)	57
XhoI	CTCGAG	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.