MD15G1073100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0024276
Physical Location & Seq
Reverse (-)
4978717 .. 4979140
424 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1073100.v1.1.491

Sequence Viewer

Length: 204 bp
ATGGGCTGGCCCAAGCCTGCAAGGGGTACAGCCATTCCGTGCAGGGCTTCATTTGAGGCCGACTGGACCCGGTCGCCATTATTGGAGCCTCGTAGCGATGGTGCTTACCAACTTCAATGGAGCTGGAGTCGGATTCGGATTTGGTGCTGGCTGCGGTTTCGGCGTTGGATGGGGTTTCGGAGGTTGGTTCCTTCTCCCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

8.08

Weight (kDa)

11.37

Isoelectric Point (pI)

82.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024276)

Species Orthologous Gene IDs
malus_domestica MD03G1201000.v1.1 MD15G1073100.v1.1
pyrus_communis pycom13g27910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 154
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
AoxI GGCC 2 cut(s) 8, 57
ApeKI GCWGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 9, 66
AsuC2I CCSGG 1 cut(s) 70
AvaII GGWCC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 138
BccI CCATC 2 cut(s) 92, 163
BcnI CCSGG 1 cut(s) 70
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 9, 66
BmiI GGNNCC 3 cut(s) 68, 87, 189
BmrFI CCNGG 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 145
BpuMI CCSGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 2 cut(s) 10, 59
BsiEI CGRYCG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 23
BsnI GGCC 2 cut(s) 10, 59
BspACI CCGC 1 cut(s) 154
BspANI GGCC 2 cut(s) 10, 59
BspLI GGNNCC 3 cut(s) 68, 87, 189
BsrI ACTGG 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 8, 18, 149
BstF5I GGATG 1 cut(s) 174
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 138
BsuRI GGCC 2 cut(s) 10, 59
BtgZI GCGATG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 174
Cac8I GCNNGC 3 cut(s) 8, 18, 149
Cfr13I GGNCC 2 cut(s) 9, 66
Csp6I GTAC 1 cut(s) 27
CviJI RGCY 9 cut(s) 6, 10, 16, 32, 47, 59, 88, 123, 151
CviKI_1 RGCY 9 cut(s) 6, 10, 16, 32, 47, 59, 88, 123, 151
CviQI GTAC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 152
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 2 cut(s) 10, 59
HapII CCGG 1 cut(s) 70
HinfI GANTC 2 cut(s) 127, 133
HpaII CCGG 1 cut(s) 70
Hpy188I TCNGA 3 cut(s) 132, 138, 180
HpyAV CCTTC 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 20, 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
LmnI GCTCC 2 cut(s) 85, 120
LpnPI CCDG 6 cut(s) 28, 30, 49, 83, 109, 133
Lsp1109I GCAGC 1 cut(s) 138
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 2 cut(s) 110, 146
MnlI CCTC 3 cut(s) 49, 99, 174
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 70
NlaIV GGNNCC 3 cut(s) 68, 87, 189
PfeI GAWTC 1 cut(s) 133
PflFI GACNNNGTC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 153
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PspN4I GGNNCC 3 cut(s) 68, 87, 189
PspPI GGNCC 2 cut(s) 9, 66
PsyI GACNNNGTC 1 cut(s) 70
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SatI GCNGC 1 cut(s) 152
Sau96I GGNCC 2 cut(s) 9, 66
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 70
SetI ASST 2 cut(s) 125, 185
SinI GGWCC 1 cut(s) 66
SsiI CCGC 1 cut(s) 154
StyD4I CCNGG 1 cut(s) 68
TfiI GAWTC 1 cut(s) 133
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 27
Tth111I GACNNNGTC 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.