Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0024331

Physical Location & Seq

Genomic Coordinates Forward (+)

28252762 .. 28253229

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1206500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCTAGGAACTCCAGGTTATGTTGCTCCTGATTCAACAGTCACCGTTAAATCTGATGTATACAGCTTTGGGATTGTTCTTCTTGAAATAGTTGCCAGAAGGAAAATCTCGGACAGCTCGAGGTCGGAGTCTATTTTCGTCTTACCTCAAATGTTGGAAAAGAAGGGTGGTGATGGAGATGACCAGGACCAACTGATTGATATTGTGGAAGACTTGGATGAAGACATGGAAAATCATAGGGAGGAAGTGTTGAGGACTATCCGGATCGGAGTTTGGTGTCTGCAGCATGATCACACTAGAAGGCCTCTCATGTCAGCAGTAGTGCAGGCCTTGCAAGGACTAACGGAAGTGGATCCAGACATCATTTATAAGTTTAGTCATCCAACGGCCTCTGCTTCTAAATCAAATCATCAGGATCACCTTATTTCTGTGGCACCCCAAGCATCCATTCTCTCTGGTCCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

156

Amino Acids

17.19

Weight (kDa)

4.99

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024331)

Species	Orthologous Gene IDs
malus_domestica	MD03G1206500.v1.1
pyrus_communis	pycom03g15630 pycom08g03710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	261
AclWI	GGATC	4 cut(s)	272, 347, 360, 423
AgsI	TTSAA	2 cut(s)	36, 86
AjnI	CCWGG	2 cut(s)	13, 183
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AluBI	AGCT	2 cut(s)	66, 117
AluI	AGCT	2 cut(s)	66, 117
AlwI	GGATC	4 cut(s)	272, 347, 360, 423
Ama87I	CYCGRG	1 cut(s)	118
Aor13HI	TCCGGA	1 cut(s)	261
AoxI	GGCC	3 cut(s)	302, 327, 387
ApeKI	GCWGC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	187, 458
AsuHPI	GGTGA	3 cut(s)	34, 182, 410
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	2 cut(s)	187, 458
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	433
BbsI	GAAGAC	2 cut(s)	216, 228
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	402
BciT130I	CCWGG	2 cut(s)	15, 185
BclI	TGATCA	1 cut(s)	289
BfaI	CTAG	2 cut(s)	5, 297
BfmI	CTRYAG	1 cut(s)	281
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	2 cut(s)	15, 185
Bme18I	GGWCC	2 cut(s)	187, 458
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	187, 458
BmiI	GGNNCC	2 cut(s)	354, 435
BmrFI	CCNGG	2 cut(s)	15, 185
BmsI	GCATC	1 cut(s)	452
BpiI	GAAGAC	2 cut(s)	216, 228
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
BseAI	TCCGGA	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	15, 185
BseGI	GGATG	3 cut(s)	223, 379, 443
BseXI	GCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	3 cut(s)	304, 329, 389
BshNI	GGYRCC	1 cut(s)	433
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	262
BsnI	GGCC	3 cut(s)	304, 329, 389
BsoBI	CYCGRG	1 cut(s)	118
Bsp13I	TCCGGA	1 cut(s)	261
Bsp143I	GATC	4 cut(s)	264, 289, 352, 415
BspANI	GGCC	3 cut(s)	304, 329, 389
BspEI	TCCGGA	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	354, 435
BspMAI	CTGCAG	1 cut(s)	285
BspPI	GGATC	4 cut(s)	272, 347, 360, 423
BspT107I	GGYRCC	1 cut(s)	433
BssMI	GATC	4 cut(s)	264, 289, 352, 415
BssNAI	GTATAC	1 cut(s)	61
Bst1107I	GTATAC	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	15, 185
Bst4CI	ACNGT	2 cut(s)	40, 46
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	223, 379, 443
BstKTI	GATC	4 cut(s)	267, 292, 355, 418
BstMBI	GATC	4 cut(s)	264, 289, 352, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 440
BstNI	CCWGG	2 cut(s)	15, 185
BstSCI	CCNGG	2 cut(s)	13, 183
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	2 cut(s)	216, 228
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BstZ17I	GTATAC	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	304, 329, 389
BtsCI	GGATG	3 cut(s)	223, 379, 443
Cac8I	GCNNGC	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	187, 458
CviAII	CATG	3 cut(s)	226, 287, 310
CviJI	RGCY	5 cut(s)	66, 117, 304, 329, 389
CviKI_1	RGCY	5 cut(s)	66, 117, 304, 329, 389
DpnI	GATC	4 cut(s)	266, 291, 354, 417
DpnII	GATC	4 cut(s)	264, 289, 352, 415
Eco147I	AGGCCT	2 cut(s)	304, 329
Eco47I	GGWCC	2 cut(s)	187, 458
Eco88I	CYCGRG	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	13, 183
FaeI	CATG	3 cut(s)	229, 290, 313
FaiI	YATR	7 cut(s)	21, 61, 227, 237, 288, 311, 369
FatI	CATG	3 cut(s)	225, 286, 309
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	3 cut(s)	230, 366, 430
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	2 cut(s)	5, 297
GluI	GCNGC	1 cut(s)	284
HaeIII	GGCC	3 cut(s)	304, 329, 389
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	3 cut(s)	229, 290, 313
HinfI	GANTC	2 cut(s)	32, 128
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	3 cut(s)	34, 182, 410
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	55, 112, 127, 269, 462
Hpy188III	TCNNGA	5 cut(s)	29, 83, 262, 356, 413
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	93, 157, 294
HpyCH4III	ACNGT	2 cut(s)	40, 46
HpyCH4V	TGCA	3 cut(s)	283, 325, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 440
Hsp92II	CATG	3 cut(s)	229, 290, 313
Kpn2I	TCCGGA	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	264, 289, 352, 415
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	1 cut(s)	452
MaeI	CTAG	2 cut(s)	5, 297
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	4 cut(s)	266, 291, 354, 417
MboI	GATC	4 cut(s)	264, 289, 352, 415
MboII	GAAGA	3 cut(s)	71, 221, 233
MflI	RGATCY	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	3 cut(s)	105, 135, 407
MnlI	CCTC	6 cut(s)	114, 156, 235, 246, 315, 400
MroI	TCCGGA	1 cut(s)	261
MseI	TTAA	1 cut(s)	48
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	2 cut(s)	15, 185
MvaI	CCWGG	2 cut(s)	15, 185
MwoI	GCNNNNNNNGC	2 cut(s)	331, 440
NdeII	GATC	4 cut(s)	264, 289, 352, 415
NlaIII	CATG	3 cut(s)	229, 290, 313
NlaIV	GGNNCC	2 cut(s)	354, 435
NmuCI	GTSAC	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	118
PceI	AGGCCT	2 cut(s)	304, 329
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PsiI	TTATAA	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	13, 183
PspGI	CCWGG	2 cut(s)	13, 183
PspN4I	GGNNCC	2 cut(s)	354, 435
PspPI	GGNCC	2 cut(s)	187, 458
PspXI	VCTCGAGB	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	4 cut(s)	264, 289, 352, 415
Sau96I	GGNCC	2 cut(s)	187, 458
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	15, 185
SetI	ASST	6 cut(s)	19, 68, 119, 125, 148, 423
SfaNI	GCATC	1 cut(s)	452
SfcI	CTRYAG	1 cut(s)	281
Sfr274I	CTCGAG	1 cut(s)	118
SinI	GGWCC	2 cut(s)	187, 458
SlaI	CTCGAG	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
SseBI	AGGCCT	2 cut(s)	304, 329
SspMI	CTAG	2 cut(s)	5, 297
StuI	AGGCCT	2 cut(s)	304, 329
StyD4I	CCNGG	2 cut(s)	13, 183
TaaI	ACNGT	2 cut(s)	40, 46
TaqI	TCGA	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	187, 458
XhoI	CTCGAG	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	2 cut(s)	5, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.