Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0024331

Physical Location & Seq

Genomic Coordinates Forward (+)

16847747 .. 16848881

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTTGGATTACTAATCACTGGTTCTTAGAAGAAGTTGAAACAATTGGGAGTGTACACCATTTTAACCTAGCTAGGTTAATTGGGTTTTGTGCAGAAAACAAACACAGGCTTCTCGTTTACGAGTACATGTCGAACGGGTCGCTTGAGAAATGGATTTTCAAGAGAGATCTGAGAAAGGATCTAAATTGGGCCACTCGAAAGAAGATTATTCTTGGCGTAGCCAAAGGGCTGGCTTATCTTCACGAAGATTGTAGGCACAAAATAATACATCTTGATGTAAAGCCACAGAACATTCTCTTGGATGAAAGCTTCAACGCCAAGATTTCTGATTTCGGGTTGTCCAAGCTAATTGCAAGAGATCAGAGCGAGCTGCTTATTGGAATGCTAGGAACTCCCGGTTATGTTGCTCCTGATTTAACAGTCACCGTTAAATCTGATGTATACAGCTTTGGGATTGTTCTTCTTGAAATAGTTGCCAGAAGGAAAATCTCGGACAGCTCGAGGTCGGAGTCTATTTTCGTCTGTCTTCAAATGTTGGAAAAGAAGGGTGGTGATGGAGATGATCAGGACCAACTGATTGATATTGTGGAAGACTTGGATGAAGACAAGGAAAATCATAGGGAGGAAGTGTTGAGGACTATCCGGATCGGAGTTTGGTGTCTGCAGCATGATCACACTAGAAGGCCTCTCATGTCAGCAGTAGTGCAGGCCTTGCAAGGACTAACGGAAGTGGATCCAGACATCATCTATAAGTTTAGTCATCCAACGGCCTCTGCTTCTAAATCAAATCATCAGGATCACCTTATTTCTGTGGCACCCCAAGCATCCGTTCTCTCTGGTCCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

284

Amino Acids

32.15

Weight (kDa)

6.11

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	8 - 185	1.7e-31	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	9 - 237	1.9e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024331)

Species	Orthologous Gene IDs
malus_domestica	MD03G1206500.v1.1
pyrus_communis	pycom03g15630 pycom08g03710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	817
AccI	GTMKAC	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	645
AclWI	GGATC	5 cut(s)	189, 656, 731, 744, 807
AfaI	GTAC	2 cut(s)	57, 128
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	5 cut(s)	41, 163, 316, 470, 533
AjuI	GAANNNNNNNTTGG	4 cut(s)	284, 316, 816, 848
AluBI	AGCT	6 cut(s)	74, 312, 349, 373, 450, 501
AluI	AGCT	6 cut(s)	74, 312, 349, 373, 450, 501
AlwI	GGATC	5 cut(s)	189, 656, 731, 744, 807
Ama87I	CYCGRG	1 cut(s)	502
Aor13HI	TCCGGA	1 cut(s)	645
AoxI	GGCC	4 cut(s)	192, 686, 711, 771
ApeKI	GCWGC	2 cut(s)	373, 667
AspS9I	GGNCC	3 cut(s)	192, 571, 842
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	3 cut(s)	418, 566, 794
AvaI	CYCGRG	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	571, 842
BamHI	GGATCC	1 cut(s)	736
BanI	GGYRCC	1 cut(s)	817
BbsI	GAAGAC	3 cut(s)	521, 600, 612
BbvI	GCAGC	2 cut(s)	360, 679
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	1 cut(s)	786
BclI	TGATCA	2 cut(s)	565, 673
BcnI	CCSGG	1 cut(s)	399
BfaI	CTAG	4 cut(s)	71, 75, 389, 681
BfmI	CTRYAG	1 cut(s)	665
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	374, 668
BlsI	GCNGC	2 cut(s)	375, 669
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	2 cut(s)	571, 842
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	3 cut(s)	192, 571, 842
BmiI	GGNNCC	2 cut(s)	738, 819
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	836
BpiI	GAAGAC	3 cut(s)	521, 600, 612
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	645
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bse1I	ACTGG	1 cut(s)	26
BseAI	TCCGGA	1 cut(s)	645
BseGI	GGATG	4 cut(s)	310, 607, 763, 827
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	360, 679
BsgI	GTGCAG	2 cut(s)	114, 728
BshFI	GGCC	4 cut(s)	194, 688, 713, 773
BshNI	GGYRCC	1 cut(s)	817
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	2 cut(s)	399, 646
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	4 cut(s)	194, 688, 713, 773
BsoBI	CYCGRG	1 cut(s)	502
Bsp13I	TCCGGA	1 cut(s)	645
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	8 cut(s)	169, 181, 361, 565, 648, 673, 736, 799
BspANI	GGCC	4 cut(s)	194, 688, 713, 773
BspCNI	CTCAG	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	645
BspLI	GGNNCC	2 cut(s)	738, 819
BspMAI	CTGCAG	1 cut(s)	669
BspPI	GGATC	5 cut(s)	189, 656, 731, 744, 807
BspT107I	GGYRCC	1 cut(s)	817
BsrGI	TGTACA	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	26
BssMI	GATC	8 cut(s)	169, 181, 361, 565, 648, 673, 736, 799
BssNAI	GTATAC	1 cut(s)	445
Bst1107I	GTATAC	1 cut(s)	445
Bst4CI	ACNGT	2 cut(s)	424, 430
BstAPI	GCANNNNNTGC	1 cut(s)	715
BstAUI	TGTACA	1 cut(s)	55
BstC8I	GCNNGC	3 cut(s)	234, 371, 711
BstDEI	CTNAG	2 cut(s)	28, 173
BstF5I	GGATG	4 cut(s)	310, 607, 763, 827
BstKTI	GATC	8 cut(s)	172, 184, 364, 568, 651, 676, 739, 802
BstMBI	GATC	8 cut(s)	169, 181, 361, 565, 648, 673, 736, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	715, 824
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	665
BstV1I	GCAGC	2 cut(s)	360, 679
BstV2I	GAAGAC	3 cut(s)	521, 600, 612
BstX2I	RGATCY	3 cut(s)	169, 181, 736
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	3 cut(s)	169, 181, 736
BstZ17I	GTATAC	1 cut(s)	445
BsuRI	GGCC	4 cut(s)	194, 688, 713, 773
BtsCI	GGATG	4 cut(s)	310, 607, 763, 827
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	3 cut(s)	234, 371, 711
Cfr13I	GGNCC	3 cut(s)	192, 571, 842
Csp6I	GTAC	2 cut(s)	56, 127
CviAII	CATG	3 cut(s)	130, 671, 694
CviQI	GTAC	2 cut(s)	56, 127
DdeI	CTNAG	2 cut(s)	28, 173
DpnI	GATC	8 cut(s)	171, 183, 363, 567, 650, 675, 738, 801
DpnII	GATC	8 cut(s)	169, 181, 361, 565, 648, 673, 736, 799
Eco147I	AGGCCT	2 cut(s)	688, 713
Eco47I	GGWCC	2 cut(s)	571, 842
Eco88I	CYCGRG	1 cut(s)	502
FaeI	CATG	3 cut(s)	133, 674, 697
FaiI	YATR	7 cut(s)	131, 405, 445, 621, 672, 695, 753
FatI	CATG	3 cut(s)	129, 670, 693
FbaI	TGATCA	2 cut(s)	565, 673
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	374, 668
FokI	GGATG	4 cut(s)	317, 614, 750, 814
Fsp4HI	GCNGC	2 cut(s)	374, 668
FspBI	CTAG	4 cut(s)	71, 75, 389, 681
GluI	GCNGC	2 cut(s)	374, 668
HaeIII	GGCC	4 cut(s)	194, 688, 713, 773
HapII	CCGG	2 cut(s)	399, 646
Hin1II	CATG	3 cut(s)	133, 674, 697
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	2 cut(s)	399, 646
HphI	GGTGA	3 cut(s)	418, 566, 794
Hpy166II	GTNNAC	4 cut(s)	56, 58, 121, 445
Hpy188I	TCNGA	8 cut(s)	174, 331, 366, 439, 496, 511, 653, 846
Hpy188III	TCNNGA	9 cut(s)	163, 245, 275, 413, 467, 569, 646, 740, 797
Hpy8I	GTNNAC	4 cut(s)	56, 58, 121, 445
HpyAV	CCTTC	3 cut(s)	477, 541, 678
HpyCH4III	ACNGT	2 cut(s)	424, 430
HpyCH4V	TGCA	5 cut(s)	95, 356, 667, 709, 718
HpyF10VI	GCNNNNNNNGC	2 cut(s)	715, 824
HpyF3I	CTNAG	2 cut(s)	28, 173
Hsp92II	CATG	3 cut(s)	133, 674, 697
Kpn2I	TCCGGA	1 cut(s)	645
Ksp22I	TGATCA	2 cut(s)	565, 673
Kzo9I	GATC	8 cut(s)	169, 181, 361, 565, 648, 673, 736, 799
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	2 cut(s)	360, 679
LweI	GCATC	1 cut(s)	836
MaeI	CTAG	4 cut(s)	71, 75, 389, 681
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	8 cut(s)	171, 183, 363, 567, 650, 675, 738, 801
MboI	GATC	8 cut(s)	169, 181, 361, 565, 648, 673, 736, 799
MboII	GAAGA	8 cut(s)	44, 217, 233, 260, 455, 521, 605, 617
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	3 cut(s)	169, 181, 736
MluCI	AATT	4 cut(s)	45, 81, 187, 351
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	3 cut(s)	489, 519, 791
MnlI	CCTC	5 cut(s)	498, 619, 630, 699, 784
MroI	TCCGGA	1 cut(s)	645
MseI	TTAA	4 cut(s)	66, 80, 419, 432
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	2 cut(s)	399, 646
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	715, 824
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	8 cut(s)	169, 181, 361, 565, 648, 673, 736, 799
NlaIII	CATG	3 cut(s)	133, 674, 697
NlaIV	GGNNCC	2 cut(s)	738, 819
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	502
PceI	AGGCCT	2 cut(s)	688, 713
PciI	ACATGT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PctI	GAATGC	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	375, 669
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PscI	ACATGT	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	738, 819
PspPI	GGNCC	3 cut(s)	192, 571, 842
PspXI	VCTCGAGB	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	669
PsuI	RGATCY	3 cut(s)	169, 181, 736
RsaI	GTAC	2 cut(s)	57, 128
RsaNI	GTAC	2 cut(s)	56, 127
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	4 cut(s)	66, 80, 419, 432
SatI	GCNGC	2 cut(s)	374, 668
Sau3AI	GATC	8 cut(s)	169, 181, 361, 565, 648, 673, 736, 799
Sau96I	GGNCC	3 cut(s)	192, 571, 842
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	399
SfaNI	GCATC	1 cut(s)	836
SfcI	CTRYAG	1 cut(s)	665
Sfr274I	CTCGAG	1 cut(s)	502
SinI	GGWCC	2 cut(s)	571, 842
SlaI	CTCGAG	1 cut(s)	502
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	146, 502
SmoI	CTYRAG	2 cut(s)	146, 502
Sse9I	AATT	4 cut(s)	45, 81, 187, 351
SseBI	AGGCCT	2 cut(s)	688, 713
SspMI	CTAG	4 cut(s)	71, 75, 389, 681
StuI	AGGCCT	2 cut(s)	688, 713
StyD4I	CCNGG	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	424, 430
TaqI	TCGA	3 cut(s)	134, 199, 503
TasI	AATT	4 cut(s)	45, 81, 187, 351
TatI	WGTACW	2 cut(s)	55, 126
Tru1I	TTAA	4 cut(s)	66, 80, 419, 432
Tru9I	TTAA	4 cut(s)	66, 80, 419, 432
TscAI	CASTG	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	373, 667
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	321, 618
TspGWI	ACGGA	2 cut(s)	743, 820
TspRI	CASTG	1 cut(s)	26
VpaK11BI	GGWCC	2 cut(s)	571, 842
XceI	RCATGY	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	4 cut(s)	71, 75, 389, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.