Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0028501

Physical Location & Seq

Genomic Coordinates Forward (+)

32487655 .. 32489052

Gene Structure 1398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1239300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGATTTGGATACTTTCGATCACATTTTTTATTATGTTGTCCTGTGGTCTTGGGTCTTTGGTTGAATACCATGCTTGCAAAGCTCAAGGTTTCCGGCAGCCACTTTGCATTAGCAGGACATTACACCGCATTAGTGCCATTAGGAATCGAAGAGGTGTCATTATTGGTCTAACTTGTCGTGTTGGTAGGGCAATATCTGGCAGTGCTGTCTTGCTGCGAGATTTGGTTCAAGATGGCGGTTCTTTGTTACTCATTGGGCCTCCGGGGGGAGGAAAAACAACAATGATCAGAATGAATTATATTACAATGCAGCTAGCTATTGATCTAGTGGTCTTGATAGAGGTTGTTGAAAACCATATGCCACAAGTGATTGTAATTGATGAAATTGGCACTAAACTTGAAGCTCTGGCTGCAAGAAAAATTGCGCGACGTGGAATTCAGCTAGTTGCCACAGCTCATGGTGTAACTATTGAGAATTTAATAATGAACCCTTCATTAGAGATGTTCGTTGGAGGAATACAGAGCGTGACACTAGGAGATGAAGAGGCCAGCCGGCAGGGGGTTCAGAAGACGGTGCAAGAAAGGAAAGGCCCTGCAACATTAGTTGTGGGGTGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

207

Amino Acids

22.4

Weight (kDa)

9.69

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028501)

Species	Orthologous Gene IDs
malus_domestica	MD03G1239300.v1.1
pyrus_communis	pycom03g18460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	427
AciI	CCGC	2 cut(s)	127, 237
AcsI	RAATTY	2 cut(s)	435, 475
AfiI	CCNNNNNNNGG	3 cut(s)	266, 269, 559
AgsI	TTSAA	4 cut(s)	65, 230, 350, 401
AjiI	CACGTC	1 cut(s)	431
AluBI	AGCT	6 cut(s)	83, 313, 317, 404, 442, 455
AluI	AGCT	6 cut(s)	83, 313, 317, 404, 442, 455
AoxI	GGCC	3 cut(s)	257, 546, 589
ApeKI	GCWGC	4 cut(s)	97, 214, 310, 410
ApoI	RAATTY	2 cut(s)	435, 475
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	257, 590
AsuC2I	CCSGG	1 cut(s)	264
AsuNHI	GCTAGC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	575
BbvI	GCAGC	4 cut(s)	109, 201, 322, 397
BccI	CCATC	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	3
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	264
BfaI	CTAG	4 cut(s)	314, 326, 443, 533
BfuI	GTATCC	1 cut(s)	3
BisI	GCNGC	4 cut(s)	98, 215, 311, 411
BlsI	GCNGC	4 cut(s)	99, 216, 312, 412
Bme1390I	CCNGG	1 cut(s)	264
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	257, 590
BmrFI	CCNGG	1 cut(s)	264
BmtI	GCTAGC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	3 cut(s)	266, 269, 559
Bse118I	RCCGGY	1 cut(s)	552
BseDI	CCNNGG	1 cut(s)	263
BseLI	CCNNNNNNNGG	3 cut(s)	266, 269, 559
BseXI	GCAGC	4 cut(s)	109, 201, 322, 397
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	3 cut(s)	259, 548, 591
BsiSI	CCGG	3 cut(s)	94, 263, 553
BslI	CCNNNNNNNGG	3 cut(s)	266, 269, 559
BsnI	GGCC	3 cut(s)	259, 548, 591
Bsp143I	GATC	3 cut(s)	18, 285, 322
BspACI	CCGC	2 cut(s)	127, 237
BspANI	GGCC	3 cut(s)	259, 548, 591
BspFNI	CGCG	1 cut(s)	427
BspOI	GCTAGC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	552
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	3 cut(s)	18, 285, 322
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	2 cut(s)	145, 537
BstC8I	GCNNGC	4 cut(s)	76, 315, 550, 554
BstFNI	CGCG	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	3 cut(s)	21, 288, 325
BstMBI	GATC	3 cut(s)	18, 285, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 410
BstSCI	CCNGG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	4 cut(s)	109, 201, 322, 397
BstV2I	GAAGAC	1 cut(s)	575
BsuI	GTATCC	1 cut(s)	3
BsuRI	GGCC	3 cut(s)	259, 548, 591
BtrI	CACGTC	1 cut(s)	431
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	4 cut(s)	76, 315, 550, 554
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	552
Cfr13I	GGNCC	2 cut(s)	257, 590
CviAII	CATG	2 cut(s)	71, 458
DpnI	GATC	3 cut(s)	20, 287, 324
DpnII	GATC	3 cut(s)	18, 285, 322
Eam1104I	CTCTTC	2 cut(s)	145, 537
EarI	CTCTTC	2 cut(s)	145, 537
EcoO109I	RGGNCCY	1 cut(s)	590
EcoRI	GAATTC	1 cut(s)	435
FaeI	CATG	2 cut(s)	74, 461
FaiI	YATR	6 cut(s)	35, 72, 300, 357, 359, 459
FatI	CATG	2 cut(s)	70, 457
FauNDI	CATATG	1 cut(s)	357
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	98, 215, 311, 411
Fsp4HI	GCNGC	4 cut(s)	98, 215, 311, 411
FspBI	CTAG	4 cut(s)	314, 326, 443, 533
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	4 cut(s)	98, 215, 311, 411
HaeIII	GGCC	3 cut(s)	259, 548, 591
HapII	CCGG	3 cut(s)	94, 263, 553
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	2 cut(s)	74, 461
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	3 cut(s)	94, 263, 553
Hpy188I	TCNGA	2 cut(s)	290, 567
Hpy188III	TCNNGA	2 cut(s)	230, 334
Hpy99I	CGWCG	1 cut(s)	432
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	6 cut(s)	78, 108, 310, 413, 577, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 410
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	2 cut(s)	74, 461
HspAI	GCGC	1 cut(s)	425
KroI	GCCGGC	1 cut(s)	552
KroNI	GCCGGC	1 cut(s)	554
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	18, 285, 322
Lsp1109I	GCAGC	4 cut(s)	109, 201, 322, 397
MaeI	CTAG	4 cut(s)	314, 326, 443, 533
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	3 cut(s)	246, 463, 526
MalI	GATC	3 cut(s)	20, 287, 324
MboI	GATC	3 cut(s)	18, 285, 322
MboII	GAAGA	3 cut(s)	162, 554, 580
MluCI	AATT	6 cut(s)	295, 375, 384, 420, 435, 475
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	6 cut(s)	146, 263, 270, 334, 506, 538
MroNI	GCCGGC	1 cut(s)	552
MseI	TTAA	1 cut(s)	479
MspI	CCGG	3 cut(s)	94, 263, 553
MspR9I	CCNGG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	2 cut(s)	80, 410
NaeI	GCCGGC	1 cut(s)	554
NciI	CCSGG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	357
NdeII	GATC	3 cut(s)	18, 285, 322
NgoMIV	GCCGGC	1 cut(s)	552
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	74, 461
NmuCI	GTSAC	1 cut(s)	526
PdiI	GCCGGC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	99, 216, 312, 412
PspPI	GGNCC	2 cut(s)	257, 590
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	4 cut(s)	98, 215, 311, 411
Sau3AI	GATC	3 cut(s)	18, 285, 322
Sau96I	GGNCC	2 cut(s)	257, 590
ScrFI	CCNGG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	6 cut(s)	295, 375, 384, 420, 435, 475
SsiI	CCGC	2 cut(s)	127, 237
SspMI	CTAG	4 cut(s)	314, 326, 443, 533
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	17, 148
TasI	AATT	6 cut(s)	295, 375, 384, 420, 435, 475
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	4 cut(s)	97, 214, 310, 410
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	5 cut(s)	308, 396, 483, 500, 555
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	2 cut(s)	435, 475
XspI	CTAG	4 cut(s)	314, 326, 443, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.