AAA domain (dynein-related subfamily)
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD03G1239300.v1.1 |
| pyrus_communis | pycom03g18460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 456 |
| AciI | CCGC | 2 cut(s) | 106, 216 |
| AcsI | RAATTY | 2 cut(s) | 465, 505 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 248 |
| AgsI | TTSAA | 4 cut(s) | 32, 209, 380, 431 |
| AluBI | AGCT | 2 cut(s) | 434, 472 |
| AluI | AGCT | 2 cut(s) | 434, 472 |
| AoxI | GGCC | 1 cut(s) | 236 |
| ApeKI | GCWGC | 2 cut(s) | 193, 440 |
| ApoI | RAATTY | 2 cut(s) | 465, 505 |
| AspLEI | GCGC | 1 cut(s) | 457 |
| AspS9I | GGNCC | 1 cut(s) | 236 |
| AsuC2I | CCSGG | 1 cut(s) | 243 |
| AsuHPI | GGTGA | 1 cut(s) | 71 |
| BanII | GRGCYC | 1 cut(s) | 521 |
| BauI | CACGAG | 1 cut(s) | 340 |
| BbvI | GCAGC | 2 cut(s) | 180, 427 |
| BccI | CCATC | 1 cut(s) | 206 |
| BceAI | ACGGC | 1 cut(s) | 498 |
| BcnI | CCSGG | 1 cut(s) | 243 |
| BfaI | CTAG | 1 cut(s) | 473 |
| BisI | GCNGC | 2 cut(s) | 194, 441 |
| BlsI | GCNGC | 2 cut(s) | 195, 442 |
| Bme1390I | CCNGG | 1 cut(s) | 243 |
| BmgT120I | GGNCC | 1 cut(s) | 236 |
| BmrFI | CCNGG | 1 cut(s) | 243 |
| BmsI | GCATC | 1 cut(s) | 522 |
| BpuEI | CTTGAG | 1 cut(s) | 35 |
| BpuMI | CCSGG | 1 cut(s) | 243 |
| BsaJI | CCNNGG | 2 cut(s) | 242, 480 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 248 |
| Bse1I | ACTGG | 2 cut(s) | 118, 421 |
| BseDI | CCNNGG | 2 cut(s) | 242, 480 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 248 |
| BseNI | ACTGG | 2 cut(s) | 118, 421 |
| BseXI | GCAGC | 2 cut(s) | 180, 427 |
| BshFI | GGCC | 1 cut(s) | 238 |
| BsiSI | CCGG | 1 cut(s) | 242 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 248 |
| BsnI | GGCC | 1 cut(s) | 238 |
| Bsp1286I | GDGCHC | 1 cut(s) | 521 |
| Bsp143I | GATC | 1 cut(s) | 264 |
| BspACI | CCGC | 2 cut(s) | 106, 216 |
| BspANI | GGCC | 1 cut(s) | 238 |
| BsrI | ACTGG | 2 cut(s) | 118, 421 |
| BssECI | CCNNGG | 2 cut(s) | 242, 480 |
| BssMI | GATC | 1 cut(s) | 264 |
| BssSI | CACGAG | 1 cut(s) | 340 |
| Bst2BI | CACGAG | 1 cut(s) | 340 |
| BstC8I | GCNNGC | 3 cut(s) | 43, 85, 445 |
| BstDSI | CCRYGG | 1 cut(s) | 480 |
| BstHHI | GCGC | 1 cut(s) | 457 |
| BstKTI | GATC | 1 cut(s) | 267 |
| BstMBI | GATC | 1 cut(s) | 264 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 114, 440 |
| BstSCI | CCNGG | 1 cut(s) | 241 |
| BstV1I | GCAGC | 2 cut(s) | 180, 427 |
| BsuRI | GGCC | 1 cut(s) | 238 |
| BtgI | CCRYGG | 1 cut(s) | 480 |
| BtsI | GCAGTG | 1 cut(s) | 187 |
| BtsIMutI | CAGTG | 1 cut(s) | 187 |
| Cac8I | GCNNGC | 3 cut(s) | 43, 85, 445 |
| CfoI | GCGC | 1 cut(s) | 457 |
| Cfr13I | GGNCC | 1 cut(s) | 236 |
| CviAII | CATG | 3 cut(s) | 38, 461, 488 |
| CviJI | RGCY | 7 cut(s) | 238, 374, 434, 440, 472, 485, 519 |
| CviKI_1 | RGCY | 7 cut(s) | 238, 374, 434, 440, 472, 485, 519 |
| DpnI | GATC | 1 cut(s) | 266 |
| DpnII | GATC | 1 cut(s) | 264 |
| Eco24I | GRGCYC | 1 cut(s) | 521 |
| Eco32I | GATATC | 1 cut(s) | 347 |
| EcoRI | GAATTC | 1 cut(s) | 465 |
| EcoRV | GATATC | 1 cut(s) | 347 |
| EcoT38I | GRGCYC | 1 cut(s) | 521 |
| FaeI | CATG | 3 cut(s) | 41, 464, 491 |
| FaiI | YATR | 8 cut(s) | 39, 293, 320, 360, 387, 389, 462, 489 |
| FatI | CATG | 3 cut(s) | 37, 460, 487 |
| FauNDI | CATATG | 1 cut(s) | 387 |
| Fnu4HI | GCNGC | 2 cut(s) | 194, 441 |
| FriOI | GRGCYC | 1 cut(s) | 521 |
| Fsp4HI | GCNGC | 2 cut(s) | 194, 441 |
| FspBI | CTAG | 1 cut(s) | 473 |
| FspI | TGCGCA | 1 cut(s) | 456 |
| GlaI | GCGC | 1 cut(s) | 456 |
| GluI | GCNGC | 2 cut(s) | 194, 441 |
| HaeIII | GGCC | 1 cut(s) | 238 |
| HapII | CCGG | 1 cut(s) | 242 |
| HhaI | GCGC | 1 cut(s) | 457 |
| Hin1II | CATG | 3 cut(s) | 41, 464, 491 |
| Hin6I | GCGC | 1 cut(s) | 455 |
| HinP1I | GCGC | 1 cut(s) | 455 |
| HincII | GTYRAC | 1 cut(s) | 303 |
| HindII | GTYRAC | 1 cut(s) | 303 |
| HinfI | GANTC | 2 cut(s) | 124, 299 |
| HpaII | CCGG | 1 cut(s) | 242 |
| HphI | GGTGA | 1 cut(s) | 71 |
| Hpy166II | GTNNAC | 1 cut(s) | 303 |
| Hpy188I | TCNGA | 1 cut(s) | 325 |
| Hpy188III | TCNNGA | 2 cut(s) | 209, 364 |
| Hpy8I | GTNNAC | 1 cut(s) | 303 |
| HpyAV | CCTTC | 1 cut(s) | 531 |
| HpyCH4V | TGCA | 2 cut(s) | 45, 443 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 114, 440 |
| Hsp92II | CATG | 3 cut(s) | 41, 464, 491 |
| HspAI | GCGC | 1 cut(s) | 455 |
| Kzo9I | GATC | 1 cut(s) | 264 |
| LpnPI | CCDG | 9 cut(s) | 22, 69, 79, 99, 162, 255, 402, 422, 536 |
| Lsp1109I | GCAGC | 2 cut(s) | 180, 427 |
| LweI | GCATC | 1 cut(s) | 522 |
| MaeI | CTAG | 1 cut(s) | 473 |
| MaeIII | GTNAC | 2 cut(s) | 225, 493 |
| MalI | GATC | 1 cut(s) | 266 |
| MboI | GATC | 1 cut(s) | 264 |
| MhlI | GDGCHC | 1 cut(s) | 521 |
| MluCI | AATT | 6 cut(s) | 326, 333, 405, 450, 465, 505 |
| MlyI | GAGTC | 1 cut(s) | 308 |
| MmeI | TCCRAC | 1 cut(s) | 520 |
| MnlI | CCTC | 3 cut(s) | 249, 364, 549 |
| MseI | TTAA | 1 cut(s) | 509 |
| MspI | CCGG | 1 cut(s) | 242 |
| MspR9I | CCNGG | 1 cut(s) | 243 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 114, 440 |
| NciI | CCSGG | 1 cut(s) | 243 |
| NdeI | CATATG | 1 cut(s) | 387 |
| NdeII | GATC | 1 cut(s) | 264 |
| NlaIII | CATG | 3 cut(s) | 41, 464, 491 |
| NsbI | TGCGCA | 1 cut(s) | 456 |
| PfeI | GAWTC | 1 cut(s) | 124 |
| PkrI | GCNGC | 2 cut(s) | 195, 442 |
| PleI | GAGTC | 1 cut(s) | 307 |
| PpsI | GAGTC | 1 cut(s) | 307 |
| PspPI | GGNCC | 1 cut(s) | 236 |
| SaqAI | TTAA | 1 cut(s) | 509 |
| SatI | GCNGC | 2 cut(s) | 194, 441 |
| Sau3AI | GATC | 1 cut(s) | 264 |
| Sau96I | GGNCC | 1 cut(s) | 236 |
| SchI | GAGTC | 1 cut(s) | 308 |
| ScrFI | CCNGG | 1 cut(s) | 243 |
| SduI | GDGCHC | 1 cut(s) | 521 |
| SetI | ASST | 6 cut(s) | 57, 136, 436, 474, 555, 560 |
| SfaNI | GCATC | 1 cut(s) | 522 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 6 cut(s) | 326, 333, 405, 450, 465, 505 |
| SsiI | CCGC | 2 cut(s) | 106, 216 |
| SspMI | CTAG | 1 cut(s) | 473 |
| StyD4I | CCNGG | 1 cut(s) | 241 |
| TaqI | TCGA | 2 cut(s) | 79, 127 |
| TasI | AATT | 6 cut(s) | 326, 333, 405, 450, 465, 505 |
| TfiI | GAWTC | 1 cut(s) | 124 |
| Tru1I | TTAA | 1 cut(s) | 509 |
| Tru9I | TTAA | 1 cut(s) | 509 |
| TscAI | CASTG | 1 cut(s) | 187 |
| TseI | GCWGC | 2 cut(s) | 193, 440 |
| TspDTI | ATGAA | 2 cut(s) | 426, 513 |
| TspRI | CASTG | 1 cut(s) | 187 |
| XapI | RAATTY | 2 cut(s) | 465, 505 |
| XspI | CTAG | 1 cut(s) | 473 |