Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0028478

Physical Location & Seq

Genomic Coordinates Forward (+)

36244839 .. 36245702

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1281600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTGGAGAAGAGGAGGAGGAACCCACTGGTGCTGACTTCCACAAAAAATCTCATCAATTCCGTACTGAGTGAAGGCCACCGCGTCGACGGCAGCGGCGATGGTGACGCGTCGACGAGCTTGCAGTTGCCGCCGGGGACCCTCCGGCTGTCCAAGGACAGAGCGGTCATTTCCAGCAGCCCCAAATTGGCCTCTCTCGACGACTCTGCTTTGGTCGGGCTTTCCACTCCCGCCCTCAAACGGCTCTCAATCACCTCCGGCTCACTGATTATACTAGAATTGAAAACTCCGAACAACCGTGACTGCGCTGCAAAGATTGAACAAACCTTGTCCGAGTTTTCCCACGCAATGCTTGTTTTGCCTTGTTGTGCATTTCCTGAAAATGATCGAATGTCGTTGAAGCGGGAAGTTGCCTATATATCACCTCTATTAGCATTTAACCTTGACCTGCACACATTGTGCTTCAAATCACTCGCTCATAGAGGGGAAGACACTCTGGCTTCTTATTTTGGAGAGAGTGGACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA

Protein Analysis

176

Amino Acids

18.97

Weight (kDa)

8.39

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028478)

Species	Orthologous Gene IDs
malus_domestica	MD03G1281600.v1.1
pyrus_communis	pycom03g22240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	456
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	2 cut(s)	87, 113
AccII	CGCG	2 cut(s)	84, 110
AciI	CCGC	6 cut(s)	82, 96, 131, 164, 231, 403
AdeI	CACNNNGTG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	187, 240
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	283, 320, 400, 466
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
AoxI	GGCC	2 cut(s)	76, 189
ApeKI	GCWGC	3 cut(s)	93, 177, 308
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	116, 244, 414
AvaII	GGWCC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	105, 189, 295
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	2 cut(s)	106, 257
BcgI	CGANNNNNNTGC	4 cut(s)	103, 137, 188, 222
BcnI	CCSGG	1 cut(s)	135
BfaI	CTAG	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	456
BisI	GCNGC	5 cut(s)	94, 97, 131, 178, 309
BlsI	GCNGC	5 cut(s)	95, 98, 132, 179, 310
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	3 cut(s)	23, 139, 140
BmrFI	CCNGG	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	134, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 240
Bse1I	ACTGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	134, 153
BseLI	CCNNNNNNNGG	2 cut(s)	187, 240
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	28, 31
BseXI	GCAGC	3 cut(s)	105, 189, 295
BsgI	GTGCAG	1 cut(s)	434
Bsh1236I	CGCG	2 cut(s)	84, 110
BshFI	GGCC	2 cut(s)	78, 191
BsiSI	CCGG	3 cut(s)	134, 145, 258
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	187, 240
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	78, 191
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	6 cut(s)	82, 96, 131, 164, 231, 403
BspANI	GGCC	2 cut(s)	78, 191
BspCNI	CTCAG	1 cut(s)	60
BspFNI	CGCG	2 cut(s)	84, 110
BspLI	GGNNCC	3 cut(s)	23, 139, 140
BspMI	ACCTGC	1 cut(s)	456
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	134, 153
BssMI	GATC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	68
BstFNI	CGCG	2 cut(s)	84, 110
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 130, 358
BstSCI	CCNGG	1 cut(s)	133
BstUI	CGCG	2 cut(s)	84, 110
BstV1I	GCAGC	3 cut(s)	105, 189, 295
BstV2I	GAAGAC	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	78, 191
BtgZI	GCGATG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	26, 263
BveI	ACCTGC	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	122
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	138
CseI	GACGC	3 cut(s)	73, 99, 116
Csp6I	GTAC	1 cut(s)	65
CviJI	RGCY	9 cut(s)	78, 120, 148, 180, 191, 220, 244, 261, 500
CviKI_1	RGCY	9 cut(s)	78, 120, 148, 180, 191, 220, 244, 261, 500
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
DraIII	CACNNNGTG	1 cut(s)	459
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaiI	YATR	4 cut(s)	272, 417, 419, 480
FaqI	GGGAC	1 cut(s)	151
FauI	CCCGC	2 cut(s)	238, 396
FblI	GTMKAC	2 cut(s)	87, 113
Fnu4HI	GCNGC	5 cut(s)	94, 97, 131, 178, 309
Fsp4HI	GCNGC	5 cut(s)	94, 97, 131, 178, 309
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	5 cut(s)	94, 97, 131, 178, 309
HaeIII	GGCC	2 cut(s)	78, 191
HapII	CCGG	3 cut(s)	134, 145, 258
HgaI	GACGC	3 cut(s)	73, 99, 116
HhaI	GCGC	1 cut(s)	308
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	2 cut(s)	88, 114
HindII	GTYRAC	2 cut(s)	88, 114
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	3 cut(s)	134, 145, 258
HphI	GGTGA	3 cut(s)	116, 244, 414
Hpy166II	GTNNAC	3 cut(s)	88, 114, 521
Hpy188I	TCNGA	2 cut(s)	291, 334
Hpy188III	TCNNGA	2 cut(s)	197, 377
Hpy8I	GTNNAC	3 cut(s)	88, 114, 521
Hpy99I	CGWCG	5 cut(s)	89, 92, 115, 118, 203
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	4 cut(s)	124, 311, 371, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 130, 358
HpyF3I	CTNAG	1 cut(s)	68
HspAI	GCGC	1 cut(s)	306
KflI	GGGWCCC	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	385
LpnPI	CCDG	8 cut(s)	14, 147, 158, 187, 271, 390, 461, 482
Lsp1109I	GCAGC	3 cut(s)	105, 189, 295
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	104, 299
MalI	GATC	1 cut(s)	387
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	1 cut(s)	385
MboII	GAAGA	2 cut(s)	22, 500
MluCI	AATT	3 cut(s)	58, 185, 278
MluI	ACGCGT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	9 cut(s)	6, 9, 12, 152, 202, 245, 265, 435, 476
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	3 cut(s)	134, 145, 258
MspR9I	CCNGG	1 cut(s)	135
MvnI	CGCG	2 cut(s)	84, 110
MwoI	GCNNNNNNNGC	3 cut(s)	90, 130, 358
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	385
NlaIV	GGNNCC	3 cut(s)	23, 139, 140
NmuCI	GTSAC	2 cut(s)	104, 299
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PkrI	GCNGC	5 cut(s)	95, 98, 132, 179, 310
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
PspN4I	GGNNCC	3 cut(s)	23, 139, 140
PspPI	GGNCC	1 cut(s)	138
PspPPI	RGGWCCY	1 cut(s)	138
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SalI	GTCGAC	2 cut(s)	86, 112
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	5 cut(s)	94, 97, 131, 178, 309
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	1 cut(s)	138
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	6 cut(s)	122, 257, 329, 427, 444, 450
SgrDI	CGTCGACG	2 cut(s)	86, 112
SinI	GGWCC	1 cut(s)	138
Sse9I	AATT	3 cut(s)	58, 185, 278
SsiI	CCGC	6 cut(s)	82, 96, 131, 164, 231, 403
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	4 cut(s)	87, 113, 198, 388
TasI	AATT	3 cut(s)	58, 185, 278
TauI	GCSGC	2 cut(s)	99, 133
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	33, 270
TseFI	GTSAC	2 cut(s)	104, 299
TseI	GCWGC	3 cut(s)	93, 177, 308
Tsp45I	GTSAC	2 cut(s)	104, 299
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	2 cut(s)	33, 270
VpaK11BI	GGWCC	1 cut(s)	138
XmiI	GTMKAC	2 cut(s)	87, 113
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.