Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0028478

Physical Location & Seq

Genomic Coordinates Forward (+)

22401184 .. 22403238

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22240.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGGAGAGGAGGAGGAGGAACCCACTGGTGCTGACTTCCACCAAAAATCTCATCAATTCCGTACTGAGTGAAGGCCACCGCGTCGACGGCAGCGGCGATGGTGACGCGTCGACGAGCTTTCAGTTGCCGCCGGGGATTCTCCGGCTTTCCAAGGACAGCCTGAAATTGGCCTCTCTCGACGACTCTGCTTTGGTCGGGCTTTCCGCTCCTACCCTCAAACGGCTCTCCATCACCTCCGGCTCGCGGGTGATTGTGAAAAATGTGGAGACAAACATACAAAGAACAGCTCAGGCCATTGTTCTGGATCCTCCGAACAACCGTGACTTCGCTGCAAAGATTGAACAATCCTTGTCCGAGTTTTCTCACGCAATGCTTGTTTTGCCTTGTTGTGCATTTCCTGAAAATGATCGAATGTCGTTGAAGCGGGAAGTTGCCTATATATCACTTCTATTAGCATTTAACCTTGACTTGCACACATTGTGCTTCAAATCACTCGTTCATAGAGGGGAAGAGATTCTGGCATCTTATTTTGGAGAGAAAGTGGATGATGAAGTGAGTGGGAAGGACGTTGAGGCTTCTGTAGTTGGACTACAGTTGGAGCCTCAGGCTCAGTTGCCGAGATATACTTCACATTTGAGAGCTGCTTTCTCATTCGTTGAATACGAAGATCGTCAAGAACTGATAGATTTGGCACTACATAACTACTTTGGAGTTGATAGATTAAGATATATTTTTCATGTGCACAAGTGTGTAGTGTTATTGAGTACGGATTCACTTGCTGCAGGATGCGGTAAGAGAACAGTTGTTAGATACATTGCTCGTCGATTGGGCCTGCATGTAGTTGAATATAGCTGTCACAATCTAATGGCATCATCTGAAAAAAGGATGTCTGTTTCACTAGCTCAAACCTTGAATACAGCTCAAGGTCCATATACTTGCCAGCAATCCTTATCCTCCGGCATTTTGATGTTTTCCGGAATTTGGGCTCTCAAGAAGGTTCGCCAAGTGATCAAGTTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA

Protein Analysis

342

Amino Acids

37.88

Weight (kDa)

8.62

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028478)

Species	Orthologous Gene IDs
malus_domestica	MD03G1281600.v1.1
pyrus_communis	pycom03g22240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	209
AccI	GTMKAC	2 cut(s)	87, 113
AccII	CGCG	3 cut(s)	84, 110, 247
AccIII	TCCGGA	1 cut(s)	977
AciI	CCGC	7 cut(s)	82, 96, 131, 207, 247, 427, 792
AclWI	GGATC	2 cut(s)	302, 315
AcsI	RAATTY	1 cut(s)	981
AdeI	CACNNNGTG	1 cut(s)	483
AfaI	GTAC	2 cut(s)	66, 769
AfiI	CCNNNNNNNGG	4 cut(s)	169, 222, 246, 984
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	6 cut(s)	344, 424, 490, 662, 848, 916
AleI	CACNNNNGTG	1 cut(s)	750
AluBI	AGCT	6 cut(s)	120, 290, 644, 855, 905, 923
AluI	AGCT	6 cut(s)	120, 290, 644, 855, 905, 923
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	1 cut(s)	263
Alw44I	GTGCAC	1 cut(s)	743
AlwI	GGATC	2 cut(s)	302, 315
Aor13HI	TCCGGA	1 cut(s)	977
AoxI	GGCC	4 cut(s)	76, 171, 294, 832
ApaLI	GTGCAC	1 cut(s)	743
ApeKI	GCWGC	4 cut(s)	93, 332, 644, 782
ApoI	RAATTY	1 cut(s)	981
Asp700I	GAANNNNTTC	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	832, 929
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	116, 226, 262
AvaII	GGWCC	1 cut(s)	929
AxyI	CCTNAGG	1 cut(s)	606
BaeGI	GKGCMC	1 cut(s)	747
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	991
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	4 cut(s)	105, 319, 631, 769
BccI	CCATC	2 cut(s)	95, 239
BceAI	ACGGC	2 cut(s)	106, 239
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BclI	TGATCA	1 cut(s)	1011
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	902
BfmI	CTRYAG	3 cut(s)	582, 593, 783
BisI	GCNGC	6 cut(s)	94, 97, 131, 333, 645, 783
BlsI	GCNGC	6 cut(s)	95, 98, 132, 334, 646, 784
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	929
BmgT120I	GGNCC	2 cut(s)	832, 929
BmiI	GGNNCC	3 cut(s)	23, 309, 603
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	3 cut(s)	533, 779, 881
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	909, 977
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	134, 153
BsaWI	WCCGGW	1 cut(s)	977
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 222, 246, 984
Bse1I	ACTGG	1 cut(s)	33
Bse21I	CCTNAGG	1 cut(s)	606
Bse3DI	GCAATG	2 cut(s)	378, 816
BseAI	TCCGGA	1 cut(s)	977
BseDI	CCNNGG	2 cut(s)	134, 153
BseGI	GGATG	3 cut(s)	553, 794, 894
BseLI	CCNNNNNNNGG	4 cut(s)	169, 222, 246, 984
BseMI	GCAATG	2 cut(s)	378, 816
BseMII	CTCAG	4 cut(s)	59, 305, 620, 626
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	3 cut(s)	25, 28, 31
BseSI	GKGCMC	1 cut(s)	747
BseXI	GCAGC	4 cut(s)	105, 319, 631, 769
Bsh1236I	CGCG	3 cut(s)	84, 110, 247
BshFI	GGCC	4 cut(s)	78, 173, 296, 834
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	5 cut(s)	134, 145, 240, 960, 978
BslI	CCNNNNNNNGG	4 cut(s)	169, 222, 246, 984
BsmAI	GTCTC	1 cut(s)	263
BsnI	GGCC	4 cut(s)	78, 173, 296, 834
Bsp1286I	GDGCHC	2 cut(s)	747, 991
Bsp13I	TCCGGA	1 cut(s)	977
Bsp143I	GATC	4 cut(s)	307, 409, 670, 1011
BspACI	CCGC	7 cut(s)	82, 96, 131, 207, 247, 427, 792
BspANI	GGCC	4 cut(s)	78, 173, 296, 834
BspCNI	CTCAG	4 cut(s)	60, 304, 619, 625
BspEI	TCCGGA	1 cut(s)	977
BspFNI	CGCG	3 cut(s)	84, 110, 247
BspLI	GGNNCC	3 cut(s)	23, 309, 603
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	2 cut(s)	302, 315
BsrBI	CCGCTC	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	378, 816
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	134, 153
BssMI	GATC	4 cut(s)	307, 409, 670, 1011
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	323, 597, 805
Bst6I	CTCTTC	1 cut(s)	507
BstC8I	GCNNGC	3 cut(s)	245, 836, 944
BstDEI	CTNAG	4 cut(s)	68, 291, 606, 612
BstF5I	GGATG	3 cut(s)	553, 794, 894
BstFNI	CGCG	3 cut(s)	84, 110, 247
BstKTI	GATC	4 cut(s)	310, 412, 673, 1014
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	4 cut(s)	307, 409, 670, 1011
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 382
BstNSI	RCATGY	1 cut(s)	842
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	3 cut(s)	582, 593, 783
BstSLI	GKGCMC	1 cut(s)	747
BstUI	CGCG	3 cut(s)	84, 110, 247
BstV1I	GCAGC	4 cut(s)	105, 319, 631, 769
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	307
Bsu36I	CCTNAGG	1 cut(s)	606
BsuRI	GGCC	4 cut(s)	78, 173, 296, 834
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	553, 794, 894
BtsIMutI	CAGTG	1 cut(s)	26
Cac8I	GCNNGC	3 cut(s)	245, 836, 944
Cfr13I	GGNCC	2 cut(s)	832, 929
CseI	GACGC	3 cut(s)	73, 99, 116
Csp6I	GTAC	2 cut(s)	65, 768
CviAII	CATG	2 cut(s)	740, 839
CviQI	GTAC	2 cut(s)	65, 768
DdeI	CTNAG	4 cut(s)	68, 291, 606, 612
DpnI	GATC	4 cut(s)	309, 411, 672, 1013
DpnII	GATC	4 cut(s)	307, 409, 670, 1011
DraIII	CACNNNGTG	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	991
Eco47I	GGWCC	1 cut(s)	929
Eco81I	CCTNAGG	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	991
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	743, 842
FatI	CATG	2 cut(s)	739, 838
FauI	CCCGC	2 cut(s)	240, 420
FbaI	TGATCA	1 cut(s)	1011
FblI	GTMKAC	2 cut(s)	87, 113
Fnu4HI	GCNGC	6 cut(s)	94, 97, 131, 333, 645, 783
FokI	GGATG	3 cut(s)	560, 801, 901
FriOI	GRGCYC	1 cut(s)	991
Fsp4HI	GCNGC	6 cut(s)	94, 97, 131, 333, 645, 783
FspBI	CTAG	1 cut(s)	902
GluI	GCNGC	6 cut(s)	94, 97, 131, 333, 645, 783
HaeIII	GGCC	4 cut(s)	78, 173, 296, 834
HapII	CCGG	5 cut(s)	134, 145, 240, 960, 978
HgaI	GACGC	3 cut(s)	73, 99, 116
Hin1II	CATG	2 cut(s)	743, 842
HincII	GTYRAC	2 cut(s)	88, 114
HindII	GTYRAC	2 cut(s)	88, 114
HinfI	GANTC	4 cut(s)	139, 185, 517, 773
HpaII	CCGG	5 cut(s)	134, 145, 240, 960, 978
HphI	GGTGA	3 cut(s)	116, 226, 262
Hpy166II	GTNNAC	3 cut(s)	88, 114, 745
Hpy188I	TCNGA	3 cut(s)	315, 358, 880
Hpy188III	TCNNGA	6 cut(s)	179, 305, 401, 677, 978, 994
Hpy8I	GTNNAC	3 cut(s)	88, 114, 745
Hpy99I	CGWCG	6 cut(s)	89, 92, 115, 118, 185, 828
HpyAV	CCTTC	3 cut(s)	68, 559, 991
HpyCH4III	ACNGT	3 cut(s)	323, 597, 805
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	6 cut(s)	335, 395, 475, 745, 785, 838
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 382
HpyF3I	CTNAG	4 cut(s)	68, 291, 606, 612
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	2 cut(s)	743, 842
Kpn2I	TCCGGA	1 cut(s)	977
Ksp22I	TGATCA	1 cut(s)	1011
Kzo9I	GATC	4 cut(s)	307, 409, 670, 1011
LmnI	GCTCC	2 cut(s)	214, 601
Lsp1109I	GCAGC	4 cut(s)	105, 319, 631, 769
LweI	GCATC	3 cut(s)	533, 779, 881
MaeI	CTAG	1 cut(s)	902
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	3 cut(s)	104, 323, 857
MalI	GATC	4 cut(s)	309, 411, 672, 1013
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	4 cut(s)	307, 409, 670, 1011
MboII	GAAGA	2 cut(s)	524, 680
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	747, 991
MluCI	AATT	3 cut(s)	58, 167, 981
MluI	ACGCGT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	3 cut(s)	568, 579, 999
MroI	TCCGGA	1 cut(s)	977
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	2 cut(s)	462, 725
MslI	CAYNNNNRTG	2 cut(s)	750, 968
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	5 cut(s)	134, 145, 240, 960, 978
MspR9I	CCNGG	1 cut(s)	135
MvnI	CGCG	3 cut(s)	84, 110, 247
MwoI	GCNNNNNNNGC	2 cut(s)	90, 382
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	4 cut(s)	307, 409, 670, 1011
NlaIII	CATG	2 cut(s)	743, 842
NlaIV	GGNNCC	3 cut(s)	23, 309, 603
NmeAIII	GCCGAG	1 cut(s)	645
NmuCI	GTSAC	3 cut(s)	104, 323, 857
NspI	RCATGY	1 cut(s)	842
OliI	CACNNNNGTG	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 663
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	3 cut(s)	139, 517, 773
PkrI	GCNGC	6 cut(s)	95, 98, 132, 334, 646, 784
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspN4I	GGNNCC	3 cut(s)	23, 309, 603
PspPI	GGNCC	2 cut(s)	832, 929
PstI	CTGCAG	1 cut(s)	787
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	2 cut(s)	66, 769
RsaNI	GTAC	2 cut(s)	65, 768
RseI	CAYNNNNRTG	2 cut(s)	750, 968
SalI	GTCGAC	2 cut(s)	86, 112
SaqAI	TTAA	2 cut(s)	462, 725
SatI	GCNGC	6 cut(s)	94, 97, 131, 333, 645, 783
Sau3AI	GATC	4 cut(s)	307, 409, 670, 1011
Sau96I	GGNCC	2 cut(s)	832, 929
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	747, 991
SfaNI	GCATC	3 cut(s)	533, 779, 881
SfcI	CTRYAG	3 cut(s)	582, 593, 783
SgrDI	CGTCGACG	2 cut(s)	86, 112
SinI	GGWCC	1 cut(s)	929
SmiMI	CAYNNNNRTG	2 cut(s)	750, 968
SmlI	CTYRAG	2 cut(s)	924, 992
SmoI	CTYRAG	2 cut(s)	924, 992
Sse9I	AATT	3 cut(s)	58, 167, 981
SsiI	CCGC	7 cut(s)	82, 96, 131, 207, 247, 427, 792
SspMI	CTAG	1 cut(s)	902
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	323, 597, 805
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	5 cut(s)	87, 113, 180, 412, 826
TasI	AATT	3 cut(s)	58, 167, 981
TauI	GCSGC	2 cut(s)	99, 133
TfiI	GAWTC	3 cut(s)	139, 517, 773
Tru1I	TTAA	2 cut(s)	462, 725
Tru9I	TTAA	2 cut(s)	462, 725
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	3 cut(s)	104, 323, 857
TseI	GCWGC	4 cut(s)	93, 332, 644, 782
Tsp45I	GTSAC	3 cut(s)	104, 323, 857
TspDTI	ATGAA	3 cut(s)	491, 567, 728
TspGWI	ACGGA	2 cut(s)	52, 785
TspRI	CASTG	1 cut(s)	33
VneI	GTGCAC	1 cut(s)	743
VpaK11BI	GGWCC	1 cut(s)	929
XapI	RAATTY	1 cut(s)	981
XceI	RCATGY	1 cut(s)	842
XmiI	GTMKAC	2 cut(s)	87, 113
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.