Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0028488

Physical Location & Seq

Genomic Coordinates Forward (+)

36247290 .. 36247952

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1281800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTATACTGGTTCAGAGGAGTTTATAAAGGATATAGTTGCGCAGACATCTGGTTTCATGCCTAGAGATATTCGTGCTTTGATTGCTGATGCTGGTGCTAACTTGATTTCCAAAGGCAATGTTCCAATTAACTCTGTTAAGTCGGAGGAATCAGATGGATCTCTCAGATCTGATGCGGAATCTGATAGTAAGTCCTCTGAAGTTGCACCTCAGGTTCTGGGGAAAGACAACTTGACTAAGGCATTGGAGCATTCAAAGAAAAGGAATGCATCAGCCCTGGGTACACCAAAGTTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA

Protein Analysis

100

Amino Acids

10.5

Weight (kDa)

5.78

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0028488)

Species	Orthologous Gene IDs
malus_domestica	MD03G1281800.v1.1
pyrus_communis	pycom03g22250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	26
Acc16I	TGCGCA	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	255
AjnI	CCWGG	1 cut(s)	276
AlwI	GGATC	1 cut(s)	166
AlwNI	CAGNNNCTG	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	43
AxyI	CCTNAGG	1 cut(s)	210
BccI	CCATC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	278
BfaI	CTAG	1 cut(s)	63
BglII	AGATCT	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	3 cut(s)	79, 163, 278
BsaJI	CCNNGG	2 cut(s)	276, 277
Bse1I	ACTGG	1 cut(s)	13
Bse21I	CCTNAGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	276, 277
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	178, 224
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	32
BsmI	GAATGC	2 cut(s)	250, 271
Bsp143I	GATC	2 cut(s)	158, 167
BspACI	CCGC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	177, 223
BspPI	GGATC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	276, 277
BssMI	GATC	2 cut(s)	158, 167
BssNAI	GTATAC	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	278
BstDEI	CTNAG	3 cut(s)	164, 210, 237
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	161, 170
BstMBI	GATC	2 cut(s)	158, 167
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	158, 167
BstYI	RGATCY	2 cut(s)	158, 167
BstZ17I	GTATAC	1 cut(s)	6
Bsu36I	CCTNAGG	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	217
CfoI	GCGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	1 cut(s)	275
CviKI_1	RGCY	1 cut(s)	275
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	3 cut(s)	164, 210, 237
DpnI	GATC	2 cut(s)	160, 169
DpnII	GATC	2 cut(s)	158, 167
Eco57I	CTGAAG	1 cut(s)	219
Eco81I	CCTNAGG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	1 cut(s)	61
FaiI	YATR	4 cut(s)	6, 26, 35, 59
FatI	CATG	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	63
FspI	TGCGCA	1 cut(s)	42
GlaI	GCGC	1 cut(s)	42
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	2 cut(s)	149, 179
Hpy166II	GTNNAC	2 cut(s)	6, 284
Hpy188I	TCNGA	7 cut(s)	16, 145, 154, 167, 172, 184, 199
Hpy8I	GTNNAC	2 cut(s)	6, 284
HpyCH4V	TGCA	2 cut(s)	206, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	3 cut(s)	164, 210, 237
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	2 cut(s)	158, 167
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	6 cut(s)	36, 78, 197, 203, 263, 290
LweI	GCATC	3 cut(s)	79, 163, 278
MaeI	CTAG	1 cut(s)	63
MalI	GATC	2 cut(s)	160, 169
MboI	GATC	2 cut(s)	158, 167
MflI	RGATCY	2 cut(s)	158, 167
MluCI	AATT	2 cut(s)	126, 294
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	4 cut(s)	10, 139, 205, 219
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	3 cut(s)	129, 138, 293
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	2 cut(s)	250, 271
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	2 cut(s)	158, 167
NlaIII	CATG	1 cut(s)	61
NsbI	TGCGCA	1 cut(s)	42
NsiI	ATGCAT	1 cut(s)	271
PasI	CCCWGGG	1 cut(s)	277
PctI	GAATGC	2 cut(s)	250, 271
PfeI	GAWTC	2 cut(s)	149, 179
PsiI	TTATAA	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	158, 167
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	129, 138, 293
Sau3AI	GATC	2 cut(s)	158, 167
ScrFI	CCNGG	1 cut(s)	278
SetI	ASST	2 cut(s)	211, 216
SfaNI	GCATC	3 cut(s)	79, 163, 278
Sse9I	AATT	2 cut(s)	126, 294
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	276
TasI	AATT	2 cut(s)	126, 294
TfiI	GAWTC	2 cut(s)	149, 179
Tru1I	TTAA	3 cut(s)	129, 138, 293
Tru9I	TTAA	3 cut(s)	129, 138, 293
TspDTI	ATGAA	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.