pycom03g22250

Peroxisome biogenesis protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
22404018 .. 22404446
429 bp
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UTR
Exon/CDS
Intron
pycom03g22250.2

Sequence Viewer

Length: 282 bp
ATGCCTAGAGATATTCGTGCTTTGATTGCTGATGCTGGTGCTAAGTTGATTTCCAGAGGCAATGTTCCGATGAACACTGTTAAGTCGGAGGAATCAGATGGATCTCTCAGATCTTATGTGGAATCTGATAGTAAGTCCTCTGAAGTTGCACCTCAGTTTCTGGGGAAAGAAAACTTGACAAAGGCATTGGAGCGTTCAAAGAAAGGGAAAGCATCAGCCCTGGGTACACCAAAGCACTTCTACGGCCTGGACGATTTGATAAACTGCTTTATGTTGGAGTAA

Protein Analysis

94

Amino Acids

10.13

Weight (kDa)

7.85

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028488)

Species Orthologous Gene IDs
malus_domestica MD03G1281800.v1.1
pyrus_communis pycom03g22250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 226
AgsI TTSAA 1 cut(s) 198
AjnI CCWGG 2 cut(s) 219, 246
AlwI GGATC 1 cut(s) 109
AlwNI CAGNNNCTG 1 cut(s) 160
AoxI GGCC 1 cut(s) 244
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 221, 248
BfaI CTAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 221, 248
BmrFI CCNGG 2 cut(s) 221, 248
BmsI GCATC 2 cut(s) 22, 221
BsaJI CCNNGG 2 cut(s) 219, 220
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 2 cut(s) 221, 248
BseDI CCNNGG 2 cut(s) 219, 220
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 121, 167
BshFI GGCC 1 cut(s) 246
BsnI GGCC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 101, 110
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 2 cut(s) 120, 166
BspPI GGATC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 219, 220
BssMI GATC 2 cut(s) 101, 110
Bst2UI CCWGG 2 cut(s) 221, 248
Bst4CI ACNGT 1 cut(s) 79
BstDEI CTNAG 3 cut(s) 42, 107, 153
BstKTI GATC 2 cut(s) 104, 113
BstMBI GATC 2 cut(s) 101, 110
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 2 cut(s) 221, 248
BstSCI CCNGG 2 cut(s) 219, 246
BstX2I RGATCY 2 cut(s) 101, 110
BstYI RGATCY 2 cut(s) 101, 110
BsuRI GGCC 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 160
Csp6I GTAC 1 cut(s) 225
CviJI RGCY 2 cut(s) 218, 246
CviKI_1 RGCY 2 cut(s) 218, 246
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 3 cut(s) 42, 107, 153
DpnI GATC 2 cut(s) 103, 112
DpnII GATC 2 cut(s) 101, 110
Eco57I CTGAAG 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 219, 246
FaiI YATR 2 cut(s) 117, 272
FspBI CTAG 1 cut(s) 6
HaeIII GGCC 1 cut(s) 246
HinfI GANTC 2 cut(s) 92, 122
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 6 cut(s) 69, 88, 97, 110, 127, 142
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 3 cut(s) 42, 107, 153
Kzo9I GATC 2 cut(s) 101, 110
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 7 cut(s) 21, 67, 146, 206, 233, 233, 260
LweI GCATC 2 cut(s) 22, 221
MaeI CTAG 1 cut(s) 6
MalI GATC 2 cut(s) 103, 112
MboI GATC 2 cut(s) 101, 110
MflI RGATCY 2 cut(s) 101, 110
MmeI TCCRAC 2 cut(s) 66, 255
MnlI CCTC 4 cut(s) 50, 82, 148, 162
MseI TTAA 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 221, 248
MvaI CCWGG 2 cut(s) 221, 248
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 2 cut(s) 101, 110
PasI CCCWGGG 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 2 cut(s) 92, 122
Psp6I CCWGG 2 cut(s) 219, 246
PspGI CCWGG 2 cut(s) 219, 246
PstNI CAGNNNCTG 1 cut(s) 160
PsuI RGATCY 2 cut(s) 101, 110
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 2 cut(s) 101, 110
ScrFI CCNGG 2 cut(s) 221, 248
SetI ASST 1 cut(s) 154
SfaNI GCATC 2 cut(s) 22, 221
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 2 cut(s) 219, 246
TaaI ACNGT 1 cut(s) 79
TfiI GAWTC 2 cut(s) 92, 122
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 86
TspRI CASTG 1 cut(s) 82
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.