MD04G1046200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0024409
Physical Location & Seq
Reverse (-)
5361812 .. 5364129
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1046200.v1.1.491

Sequence Viewer

Length: 1176 bp
ATGCTGTGGCTTTTGTGTGGAATTTTATATGGATGCTTCCTATTAGCAGCCAAACTTTGTTGTAAAAATAGGAAGAGTGGAAAGCTGAAGAAAAGATTACTTTGTCATAAGCAGTGTTACCTCTGGCAATGGCACATTTTCCTCGCCATATTCTTCACCGTCTTTGCAATAGTTGCATTCGGATTAGTTTTAGGGGGCAACGCGAGATTTCATTCACAAGCGAAATCAGTGGTGGACATTATCATAACTACTGCAAATGAAGCATCAGGTACCGTGTACAACACAACAGGAGCCATGAAAGAAATGAGCAACAACTTTGATTCAACCGGAAACACTGAGGTTTCGAGCTTCCTCACCTCCACATCCCAAAAGCTTGATACTGCAGCTGCAGCTATAGAAAGGCAGGCTAAGAAGAACCGGCGTTTGATTGACAAGGGTCTCAAGATAGTGTATATTGTAACAACAGTGCCTATTTCCTTGGGCCTGGTTGCAGTGATTGCTCTGTCAGTGTCTGGAGTTTTGAAGTTACGACGGCTAGTTCAACTGCTCATTATACTATGCTGGTTGTTAACTATTCTTTGCTGGCTATTTTTCGGGCTGTATTTCTTCTTGGCAGAGTTCTCAAACGATACATGCACAGCTCTCAAAAGTTTCCAACAAAATCCGAACAACAGCTTGAGCTCAATCCTCCCCTGCGATGAATTGGTCTCCGCAAAATCGCTTCTAAATGATGTTGGTTCCGGGATCTATAGCCTTGTTAATGAGGTCTTGAGAGTACTTACTTGTTCAGACTCCAGCAGTGGAACCTGCGAGAATGGAACAGTTATATCGGACAGCGCTTACAAACTGGTGGAACTCTACACAAGTTCAATACAAGGTATACTAAATTCATACCCAGGAATGGAAAGCCTAGTAGAATGTCAGACAGTGAAGGATGCATTCTCCGAAATCCTTGTCAAACACTGCAAACCGTTGAAGCGATACGCTAAGATGGTTTGGGCAGCAATGGTCTTTCTTGCAATACTAATGGTGTTGTTGGTTCTGTTGTGGACAACACAAGCCAGTCATGAACGAAACCATCATTCTGCAGATGGTTCTGTATCTGCAACAGAAAATGTGATTGAGTTGGGCGCAGCTACTGCCGTTAAGAACAACCCAAATCCTAGCTTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

392

Amino Acids

42.86

Weight (kDa)

8.85

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024409)

Species Orthologous Gene IDs
malus_domestica MD04G1046200.v1.1
prunus_persica Prupe.1G199700_v2.0.a1
pyrus_communis pycom04g04010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 815
Acc65I GGTACC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 880
AccII CGCG 1 cut(s) 203
AciI CCGC 1 cut(s) 711
AclWI GGATC 1 cut(s) 752
AcsI RAATTY 2 cut(s) 21, 886
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 3 cut(s) 271, 278, 777
AfeI AGCGCT 1 cut(s) 838
AfiI CCNNNNNNNGG 1 cut(s) 901
AgsI TTSAA 5 cut(s) 324, 523, 542, 870, 976
AjnI CCWGG 2 cut(s) 483, 895
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 2 cut(s) 443, 712
AlwI GGATC 1 cut(s) 752
AlwNI CAGNNNCTG 2 cut(s) 512, 1139
Aor51HI AGCGCT 1 cut(s) 838
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 6 cut(s) 47, 383, 386, 389, 1001, 1133
ApoI RAATTY 2 cut(s) 21, 886
ArsI GACNNNNNNTTYG 2 cut(s) 939, 971
Asp718I GGTACC 1 cut(s) 269
AspLEI GCGC 2 cut(s) 839, 1133
AspS9I GGNCC 1 cut(s) 481
AsuC2I CCSGG 1 cut(s) 742
AsuHPI GGTGA 2 cut(s) 148, 346
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 683
Bbv12I GWGCWC 1 cut(s) 683
BbvI GCAGC 6 cut(s) 59, 373, 395, 401, 1013, 1145
BccI CCATC 3 cut(s) 985, 1085, 1086
BceAI ACGGC 2 cut(s) 548, 1127
BciT130I CCWGG 2 cut(s) 485, 897
BcnI CCSGG 1 cut(s) 742
BcoDI GTCTC 2 cut(s) 443, 712
BfaI CTAG 3 cut(s) 536, 911, 1164
BfmI CTRYAG 5 cut(s) 381, 387, 393, 748, 1086
BfoI RGCGCY 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 815
BisI GCNGC 6 cut(s) 48, 384, 387, 390, 1002, 1134
BlpI GCTNAGC 1 cut(s) 1168
BlsI GCNGC 6 cut(s) 49, 385, 388, 391, 1003, 1135
BmcAI AGTACT 1 cut(s) 777
Bme1390I CCNGG 3 cut(s) 485, 742, 897
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 4 cut(s) 271, 292, 739, 805
BmrFI CCNGG 3 cut(s) 485, 742, 897
BmsI GCATC 3 cut(s) 23, 272, 925
BoxI GACNNNNGTC 1 cut(s) 435
BpmI CTGGAG 2 cut(s) 534, 778
Bpu1102I GCTNAGC 1 cut(s) 1168
BpuEI CTTGAG 3 cut(s) 425, 697, 790
BpuMI CCSGG 1 cut(s) 742
BsaI GGTCTC 2 cut(s) 443, 712
BsaJI CCNNGG 2 cut(s) 477, 895
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 901
Bse118I RCCGGY 1 cut(s) 417
Bse1I ACTGG 2 cut(s) 852, 1062
Bse3DI GCAATG 2 cut(s) 134, 1011
BseBI CCWGG 2 cut(s) 485, 897
BseDI CCNNGG 2 cut(s) 477, 895
BseGI GGATG 3 cut(s) 38, 362, 940
BseLI CCNNNNNNNGG 1 cut(s) 901
BseMI GCAATG 2 cut(s) 134, 1011
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 852, 1062
BseXI GCAGC 6 cut(s) 59, 373, 395, 401, 1013, 1145
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 1 cut(s) 483
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 683
BsiSI CCGG 3 cut(s) 327, 418, 741
BslI CCNNNNNNNGG 1 cut(s) 901
BsmAI GTCTC 2 cut(s) 443, 712
BsmI GAATGC 2 cut(s) 176, 938
BsnI GGCC 1 cut(s) 483
Bso31I GGTCTC 2 cut(s) 443, 712
Bsp1286I GDGCHC 1 cut(s) 683
Bsp1407I TGTACA 1 cut(s) 276
Bsp143I GATC 1 cut(s) 744
Bsp1720I GCTNAGC 1 cut(s) 1168
BspACI CCGC 1 cut(s) 711
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 1 cut(s) 203
BspHI TCATGA 1 cut(s) 1066
BspLI GGNNCC 4 cut(s) 271, 292, 739, 805
BspMAI CTGCAG 3 cut(s) 385, 391, 1090
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 1 cut(s) 752
BspT107I GGYRCC 1 cut(s) 269
BspTNI GGTCTC 2 cut(s) 443, 712
BsrDI GCAATG 2 cut(s) 134, 1011
BsrFI RCCGGY 1 cut(s) 417
BsrGI TGTACA 1 cut(s) 276
BsrI ACTGG 2 cut(s) 852, 1062
BssAI RCCGGY 1 cut(s) 417
BssECI CCNNGG 2 cut(s) 477, 895
BssMI GATC 1 cut(s) 744
BssNAI GTATAC 1 cut(s) 881
BssT1I CCWWGG 1 cut(s) 477
Bst1107I GTATAC 1 cut(s) 881
Bst2UI CCWGG 2 cut(s) 485, 897
Bst4CI ACNGT 6 cut(s) 160, 274, 466, 823, 928, 972
Bst6I CTCTTC 1 cut(s) 68
BstAPI GCANNNNNTGC 3 cut(s) 173, 497, 1139
BstAUI TGTACA 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 405, 584
BstDEI CTNAG 4 cut(s) 336, 408, 987, 1168
BstF5I GGATG 3 cut(s) 38, 362, 940
BstFNI CGCG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 840
BstHHI GCGC 2 cut(s) 839, 1133
BstKTI GATC 1 cut(s) 747
BstMAI GTCTC 2 cut(s) 443, 712
BstMBI GATC 1 cut(s) 744
BstMWI GCNNNNNNNGC 5 cut(s) 173, 260, 389, 497, 1139
BstNI CCWGG 2 cut(s) 485, 897
BstNSI RCATGY 1 cut(s) 636
BstPAI GACNNNNGTC 1 cut(s) 435
BstSCI CCNGG 3 cut(s) 483, 740, 895
BstSFI CTRYAG 5 cut(s) 381, 387, 393, 748, 1086
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 6 cut(s) 59, 373, 395, 401, 1013, 1145
BstX2I RGATCY 1 cut(s) 744
BstYI RGATCY 1 cut(s) 744
BstZ17I GTATAC 1 cut(s) 881
BsuRI GGCC 1 cut(s) 483
BtgZI GCGATG 1 cut(s) 711
BtsCI GGATG 3 cut(s) 38, 362, 940
BtsI GCAGTG 4 cut(s) 119, 498, 805, 961
BtsIMutI CAGTG 9 cut(s) 119, 234, 333, 471, 498, 513, 805, 933, 961
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 2 cut(s) 405, 584
CaiI CAGNNNCTG 2 cut(s) 512, 1139
CciI TCATGA 1 cut(s) 1066
CfoI GCGC 2 cut(s) 839, 1133
Cfr10I RCCGGY 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 3 cut(s) 270, 277, 776
CviAII CATG 3 cut(s) 295, 633, 1067
CviQI GTAC 3 cut(s) 270, 277, 776
DdeI CTNAG 4 cut(s) 336, 408, 987, 1168
DpnI GATC 1 cut(s) 746
DpnII GATC 1 cut(s) 744
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 681
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 683
Eco31I GGTCTC 2 cut(s) 443, 712
Eco47III AGCGCT 1 cut(s) 838
Eco53kI GAGCTC 1 cut(s) 681
Eco57I CTGAAG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 681
EcoRII CCWGG 2 cut(s) 483, 895
EcoT14I CCWWGG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 940
EcoT38I GRGCYC 1 cut(s) 683
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 3 cut(s) 298, 636, 1070
FatI CATG 3 cut(s) 294, 632, 1066
FblI GTMKAC 1 cut(s) 880
Fnu4HI GCNGC 6 cut(s) 48, 384, 387, 390, 1002, 1134
FokI GGATG 3 cut(s) 45, 349, 947
FriOI GRGCYC 1 cut(s) 683
Fsp4HI GCNGC 6 cut(s) 48, 384, 387, 390, 1002, 1134
FspBI CTAG 3 cut(s) 536, 911, 1164
GlaI GCGC 2 cut(s) 838, 1132
GluI GCNGC 6 cut(s) 48, 384, 387, 390, 1002, 1134
GsuI CTGGAG 2 cut(s) 534, 778
HaeII RGCGCY 1 cut(s) 840
HaeIII GGCC 1 cut(s) 483
HapII CCGG 3 cut(s) 327, 418, 741
HhaI GCGC 2 cut(s) 839, 1133
Hin1II CATG 3 cut(s) 298, 636, 1070
Hin6I GCGC 2 cut(s) 837, 1131
HinP1I GCGC 2 cut(s) 837, 1131
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 2 cut(s) 320, 791
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 3 cut(s) 327, 418, 741
HphI GGTGA 2 cut(s) 148, 346
Hpy166II GTNNAC 5 cut(s) 235, 277, 570, 881, 1050
Hpy188I TCNGA 6 cut(s) 182, 666, 790, 832, 924, 946
Hpy188III TCNNGA 4 cut(s) 442, 513, 769, 1067
Hpy8I GTNNAC 5 cut(s) 235, 277, 570, 881, 1050
Hpy99I CGWCG 1 cut(s) 534
HpyAV CCTTC 1 cut(s) 925
HpyCH4III ACNGT 6 cut(s) 160, 274, 466, 823, 928, 972
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 260, 389, 497, 1139
HpyF3I CTNAG 4 cut(s) 336, 408, 987, 1168
Hsp92II CATG 3 cut(s) 298, 636, 1070
HspAI GCGC 2 cut(s) 837, 1131
KpnI GGTACC 1 cut(s) 273
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 1 cut(s) 744
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 6 cut(s) 59, 373, 395, 401, 1013, 1145
LweI GCATC 3 cut(s) 23, 272, 925
MaeI CTAG 3 cut(s) 536, 911, 1164
MaeIII GTNAC 3 cut(s) 116, 457, 525
MalI GATC 1 cut(s) 746
MboI GATC 1 cut(s) 744
MboII GAAGA 5 cut(s) 85, 100, 145, 424, 598
MflI RGATCY 1 cut(s) 744
MhlI GDGCHC 1 cut(s) 683
MluCI AATT 3 cut(s) 21, 701, 886
MlyI GAGTC 1 cut(s) 785
MmeI TCCRAC 1 cut(s) 679
MnlI CCTC 7 cut(s) 131, 152, 331, 362, 367, 698, 757
Mph1103I ATGCAT 1 cut(s) 940
MseI TTAA 3 cut(s) 569, 759, 1146
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 3 cut(s) 327, 418, 741
MspR9I CCNGG 3 cut(s) 485, 742, 897
Mva1269I GAATGC 2 cut(s) 176, 938
MvaI CCWGG 2 cut(s) 485, 897
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 5 cut(s) 173, 260, 389, 497, 1139
NciI CCSGG 1 cut(s) 742
NdeII GATC 1 cut(s) 744
NlaIII CATG 3 cut(s) 298, 636, 1070
NlaIV GGNNCC 4 cut(s) 271, 292, 739, 805
NsiI ATGCAT 1 cut(s) 940
NspI RCATGY 1 cut(s) 636
PagI TCATGA 1 cut(s) 1066
PctI GAATGC 2 cut(s) 176, 938
PfeI GAWTC 1 cut(s) 320
PfoI TCCNGGA 1 cut(s) 740
PkrI GCNGC 6 cut(s) 49, 385, 388, 391, 1003, 1135
PleI GAGTC 1 cut(s) 785
PpsI GAGTC 1 cut(s) 785
PshAI GACNNNNGTC 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 683
Psp6I CCWGG 2 cut(s) 483, 895
PspGI CCWGG 2 cut(s) 483, 895
PspN4I GGNNCC 4 cut(s) 271, 292, 739, 805
PspPI GGNCC 1 cut(s) 481
PstI CTGCAG 3 cut(s) 385, 391, 1090
PstNI CAGNNNCTG 2 cut(s) 512, 1139
PsuI RGATCY 1 cut(s) 744
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 3 cut(s) 271, 278, 777
RsaNI GTAC 3 cut(s) 270, 277, 776
SacI GAGCTC 1 cut(s) 683
SaqAI TTAA 3 cut(s) 569, 759, 1146
SatI GCNGC 6 cut(s) 48, 384, 387, 390, 1002, 1134
Sau3AI GATC 1 cut(s) 744
Sau96I GGNCC 1 cut(s) 481
ScaI AGTACT 1 cut(s) 777
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 3 cut(s) 485, 742, 897
SduI GDGCHC 1 cut(s) 683
SfaNI GCATC 3 cut(s) 23, 272, 925
SfcI CTRYAG 5 cut(s) 381, 387, 393, 748, 1086
SmlI CTYRAG 3 cut(s) 440, 676, 769
SmoI CTYRAG 3 cut(s) 440, 676, 769
Sse9I AATT 3 cut(s) 21, 701, 886
SsiI CCGC 1 cut(s) 711
SspMI CTAG 3 cut(s) 536, 911, 1164
SstI GAGCTC 1 cut(s) 683
StyD4I CCNGG 3 cut(s) 483, 740, 895
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 6 cut(s) 160, 274, 466, 823, 928, 972
TaqI TCGA 1 cut(s) 344
TasI AATT 3 cut(s) 21, 701, 886
TatI WGTACW 2 cut(s) 276, 775
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 3 cut(s) 569, 759, 1146
Tru9I TTAA 3 cut(s) 569, 759, 1146
TscAI CASTG 9 cut(s) 119, 234, 340, 471, 498, 513, 805, 933, 968
TseI GCWGC 6 cut(s) 47, 383, 386, 389, 1001, 1133
TspDTI ATGAA 6 cut(s) 200, 273, 311, 714, 879, 1083
TspRI CASTG 9 cut(s) 119, 234, 340, 471, 498, 513, 805, 933, 968
XapI RAATTY 2 cut(s) 21, 886
XceI RCATGY 1 cut(s) 636
XmiI GTMKAC 1 cut(s) 880
XspI CTAG 3 cut(s) 536, 911, 1164
ZrmI AGTACT 1 cut(s) 777
Zsp2I ATGCAT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.