MD04G1112700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
19825779 .. 19827326
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1112700.v1.1.491

Sequence Viewer

Length: 333 bp
ATGAATTTTCAGCAAGAGAAGTTCATCAGGTTTGTTTCATTTACAATGGTCTACAACGACATCCATAACTCTTTATTAAGTTGTTTTGTTTTTGGGTTAGACACTTATATGGTCACGCCTCTGTTATCTACCTCCTCCTCTGACTCTCCTTTATGTTTCTTCTTCCTCTCACTACAAATTACAAATATGGCGGAATCGGTGGAGTTTCCCACTAGCCTCGGCATCCTTCCTTTCCGAAACAAGGTCCTATTACCAAGCGGCATCATTCAAATTCGATGTAATTCACCCAAAAGGTTTTGTGTTGTTGCGAATTGGCTTCAGATCCTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.57

Weight (kDa)

7.67

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028694)

Species Orthologous Gene IDs
malus_domestica MD04G1112700.v1.1
pyrus_communis pycom04g10270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AciI CCGC 2 cut(s) 191, 258
AclWI GGATC 1 cut(s) 316
AcsI RAATTY 2 cut(s) 4, 270
AcuI CTGAAG 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 269
AlwI GGATC 1 cut(s) 316
ApoI RAATTY 2 cut(s) 4, 270
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 276
AvaII GGWCC 1 cut(s) 244
BfaI CTAG 1 cut(s) 213
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmsI GCATC 2 cut(s) 231, 270
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 2 cut(s) 60, 222
BseLI CCNNNNNNNGG 1 cut(s) 241
BseRI GAGGAG 2 cut(s) 124, 127
BslI CCNNNNNNNGG 1 cut(s) 241
Bsp143I GATC 1 cut(s) 321
BspACI CCGC 2 cut(s) 191, 258
BspPI GGATC 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 1 cut(s) 321
BstF5I GGATG 2 cut(s) 60, 222
BstKTI GATC 1 cut(s) 324
BstMBI GATC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BtsCI GGATG 2 cut(s) 60, 222
Cfr13I GGNCC 1 cut(s) 244
CviJI RGCY 2 cut(s) 216, 316
CviKI_1 RGCY 2 cut(s) 216, 316
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
EciI GGCGGA 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 244
FaiI YATR 5 cut(s) 66, 108, 110, 154, 188
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 2 cut(s) 47, 209
Fsp4HI GCNGC 1 cut(s) 259
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 259
HinfI GANTC 2 cut(s) 143, 194
HphI GGTGA 1 cut(s) 276
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 3 cut(s) 142, 236, 321
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 236
Kzo9I GATC 1 cut(s) 321
LpnPI CCDG 1 cut(s) 13
LweI GCATC 2 cut(s) 231, 270
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 112
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 2 cut(s) 151, 154
MflI RGATCY 1 cut(s) 321
MluCI AATT 5 cut(s) 4, 177, 270, 280, 310
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 6 cut(s) 129, 142, 145, 148, 176, 227
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 107
NdeII GATC 1 cut(s) 321
NmeAIII GCCGAG 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 260
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 1 cut(s) 321
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 137
SetI ASST 4 cut(s) 32, 134, 246, 296
SfaNI GCATC 2 cut(s) 231, 270
SgeI CNNG 7 cut(s) 26, 40, 127, 225, 230, 253, 267
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 5 cut(s) 4, 177, 270, 280, 310
SsiI CCGC 2 cut(s) 191, 258
SspMI CTAG 1 cut(s) 213
TaqI TCGA 1 cut(s) 274
TasI AATT 5 cut(s) 4, 177, 270, 280, 310
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 3 cut(s) 13, 17, 27
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 2 cut(s) 4, 270
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.