pycom04g10270

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
13054890 .. 13055736
847 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g10270.3

Sequence Viewer

Length: 354 bp
ATGAATTTTCAGCAAGAGAAGTTCGTCAGGTTCGTTTCATTTACAATGGTCTACAACGACATCCATAATTCTGTGTTAAGTTGTTTTGTTTTTGGGTTAGGCACTTATATGGTAATGCCTCTGTTCTCTACCTCTTCCTCTGACTCTCCTCTCTGTTTCTTCTTCCTCTCACGACAAATTGCAAATATGGCGGAATCGGTGGAGCTTCCCACTAGCCTCGGCATCCTTCCTTTCCGAAACAAGGTCCTTTTACTAAGCGGCATCATTCAAATTCGCTGTACTTCACCCAAAAGAGTTTGGACAAATAATGACAGTAGAGGGAGTTTTCGATCACTACTTTCCGATCTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.25

Weight (kDa)

9.02

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028694)

Species Orthologous Gene IDs
malus_domestica MD04G1112700.v1.1
pyrus_communis pycom04g10270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AciI CCGC 2 cut(s) 191, 258
AcsI RAATTY 2 cut(s) 4, 270
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 269
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
ApoI RAATTY 2 cut(s) 4, 270
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 276
AvaII GGWCC 1 cut(s) 244
BfaI CTAG 2 cut(s) 213, 347
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmsI GCATC 2 cut(s) 231, 270
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 2 cut(s) 60, 222
BseLI CCNNNNNNNGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 241
Bsp143I GATC 2 cut(s) 329, 343
BspACI CCGC 2 cut(s) 191, 258
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 2 cut(s) 329, 343
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 60, 222
BstKTI GATC 2 cut(s) 332, 346
BstMBI GATC 2 cut(s) 329, 343
BstMWI GCNNNNNNNGC 1 cut(s) 188
BtsCI GGATG 2 cut(s) 60, 222
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 279
CviJI RGCY 2 cut(s) 205, 216
CviKI_1 RGCY 2 cut(s) 205, 216
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 331, 345
DpnII GATC 2 cut(s) 329, 343
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EciI GGCGGA 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 244
FaiI YATR 4 cut(s) 66, 108, 110, 188
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 2 cut(s) 47, 209
Fsp4HI GCNGC 1 cut(s) 259
FspBI CTAG 2 cut(s) 213, 347
GluI GCNGC 1 cut(s) 259
HinfI GANTC 2 cut(s) 143, 194
HphI GGTGA 1 cut(s) 276
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 3 cut(s) 142, 236, 343
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 254
Kzo9I GATC 2 cut(s) 329, 343
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 1 cut(s) 13
LweI GCATC 2 cut(s) 231, 270
MaeI CTAG 2 cut(s) 213, 347
MalI GATC 2 cut(s) 331, 345
MboI GATC 2 cut(s) 329, 343
MboII GAAGA 3 cut(s) 126, 151, 154
MluCI AATT 4 cut(s) 4, 67, 177, 270
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 7 cut(s) 129, 142, 148, 159, 176, 227, 311
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 2 cut(s) 329, 343
NmeAIII GCCGAG 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 260
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 2 cut(s) 329, 343
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 137
SetI ASST 5 cut(s) 32, 134, 207, 246, 352
SfaNI GCATC 2 cut(s) 231, 270
SgeI CNNG 6 cut(s) 26, 40, 183, 225, 230, 253
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 4 cut(s) 4, 67, 177, 270
SsiI CCGC 2 cut(s) 191, 258
SspMI CTAG 2 cut(s) 213, 347
TaaI ACNGT 1 cut(s) 314
TaqI TCGA 1 cut(s) 328
TasI AATT 4 cut(s) 4, 67, 177, 270
TatI WGTACW 1 cut(s) 278
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 17, 27
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 2 cut(s) 4, 270
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 2 cut(s) 213, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.