MD04G1188400.v1.1

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
27904235 .. 27907192
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1188400.v1.1.491

Sequence Viewer

Length: 1323 bp
ATGAAGGTGAGCGTGAGGGAGTCAACGATGGTGAAGCCGGTGGAGGAGATGCCTCCGAGAGCATTGTGGTTGTCCAACTTGGACCTGGTGCGTCGTGTCAATCACACGCCGAGCGTCTACTTCTACAAGCCTGATCAAAACTGTAGGTCAGACTTCTTCGACCCGGCGGTGCTAAAGCACGCTCTATCCAAGGCCCTCGTGCTCTTCTACCCCTTGGCTGGCCGTCTCAAGCAAAACGTGCAAAACGGGGGCCGTTTGGAGATCGATTGCAATGCGGAGGGCGTGCTGTTCGTTGTGGCGGAGACCACCTCTGTCGACCTTGATTACTTAGGCGACTTTGCACCCACTTACGAGTTCAGCAGCCTCATTCCCTCTGTTGATAGTTCCGTTGGCCTTTCCTCTTATCCCCTCCTGGTGGTGCAGGTCACACGCTTCAAATGTGGTGGAGTGGCACTTGGTGTTGGTATGGCACATTGCGTAGCTGATGGAGTTTCTGGTTTCCACTTTGTAAATACATGGTCGGATATGGCTCGTGGTAACCTAGATGACCTTACAAATATTCCACCATACATGGACAGGACATTACTTTGTGCCCGAGACCCGCCTCAACTTAACGTTGAATACCAACCTTTTGCAACCACAACAAAACCTCTCAGCAACGCAAAAGACGACGGTGGTGTTGAGAACACAACAATCTCAGTGTTCAAATTGACGAGAAACCAACTCAATATCTTGAAAGCCAAGTCCAAGGAAGACGGGAACACGATCAACTATAGCACATATGAGATATTAGCAGGTCATGTTTGGAAATGTGCATCCATGGCACGTGAACTTCCCGTTGATCAAAAGAGCAAACTACATGTTGTTGTTGATGGACGGTCCCGACTGCAACCCCCACTCCCACTTGGTTTCTTTGGGAATGTGATTGTCACAGCTACCCTTATTTCCACGGCGGGGGATCTCCAATCAAAACCAACATGGTATGCTTCAAGTTGTATTCACAATGTTCTATCGAAGATTAACGACAATTATTTTAGATCGGCAGTTGACTTCATTGAGCTTCAGCCTGATCGTTCAGCCCTTGTTCGCGGGGCTGGTTCTCTTAGGTCCCCTAATCTTGGAATAACTAGTTGGGTTAGGTTGCCAACTTATGACGCTGATTTTGGATGGGGTCGACCTATTTTTGTGGGACCTTGTGGAATTCCATTTGAGGGGAAAGCTTTCGTATTAGGAAGTGCAACTAATGATGGGAGTTTATCAGTGGTCATTTGTCTGCAATCCGAGCATATGAAATCATTTTCAAAGTTGTTCTATGACATATAA

Protein Analysis

441

Amino Acids

48.41

Weight (kDa)

6.71

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 438 1.3e-101 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022401)

Species Orthologous Gene IDs
malus_domestica MD04G1188400.v1.1
pyrus_communis pycom04g16630 pycom04g16670 pycom04g16680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 412, 785
AccI GTMKAC 3 cut(s) 117, 315, 1174
AccII CGCG 1 cut(s) 1089
AciI CCGC 6 cut(s) 167, 275, 299, 602, 953, 1089
AclI AACGTT 1 cut(s) 615
AclWI GGATC 1 cut(s) 966
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 1 cut(s) 1200
AcuI CTGAAG 1 cut(s) 1046
AcvI CACGTG 1 cut(s) 827
AdeI CACNNNGTG 1 cut(s) 458
AfiI CCNNNNNNNGG 5 cut(s) 218, 415, 954, 1118, 1211
AflIII ACRYGT 1 cut(s) 859
AgsI TTSAA 6 cut(s) 436, 620, 706, 736, 990, 1302
AhlI ACTAGT 1 cut(s) 1127
AjnI CCWGG 2 cut(s) 84, 411
AjuI GAANNNNNNNTTGG 2 cut(s) 1114, 1146
AluBI AGCT 4 cut(s) 482, 935, 1060, 1220
AluI AGCT 4 cut(s) 482, 935, 1060, 1220
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 3 cut(s) 230, 296, 591
AlwI GGATC 1 cut(s) 966
Ama87I CYCGRG 1 cut(s) 594
AoxI GGCC 4 cut(s) 192, 220, 250, 391
ApeKI GCWGC 1 cut(s) 360
ApoI RAATTY 1 cut(s) 1200
ArsI GACNNNNNNTTYG 2 cut(s) 1145, 1177
Asp700I GAANNNNTTC 1 cut(s) 1220
AspS9I GGNCC 6 cut(s) 82, 193, 250, 879, 1107, 1190
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 19, 43
AvaI CYCGRG 1 cut(s) 594
AvaII GGWCC 4 cut(s) 82, 879, 1107, 1190
BaeGI GKGCMC 1 cut(s) 595
BauI CACGAG 2 cut(s) 197, 531
BbrPI CACGTG 1 cut(s) 827
BbsI GAAGAC 1 cut(s) 759
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 372
BccI CCATC 5 cut(s) 22, 479, 866, 1161, 1241
BceAI ACGGC 3 cut(s) 207, 237, 966
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 2 cut(s) 86, 413
BclI TGATCA 2 cut(s) 133, 841
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 3 cut(s) 230, 296, 591
BcuI ACTAGT 1 cut(s) 1127
BfaI CTAG 2 cut(s) 542, 1128
BfmI CTRYAG 2 cut(s) 142, 772
BfuAI ACCTGC 2 cut(s) 412, 785
BisI GCNGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 362
Bme1390I CCNGG 3 cut(s) 86, 164, 413
Bme18I GGWCC 4 cut(s) 82, 879, 1107, 1190
BmeT110I CYCGRG 1 cut(s) 594
BmgT120I GGNCC 6 cut(s) 82, 193, 250, 879, 1107, 1190
BmiI GGNNCC 4 cut(s) 251, 881, 1109, 1191
BmrFI CCNGG 3 cut(s) 86, 164, 413
BmsI GCATC 2 cut(s) 39, 824
BpiI GAAGAC 1 cut(s) 759
BplI GAGNNNNNCTC 2 cut(s) 293, 325
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 164
Bsa29I ATCGAT 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 827
BsaI GGTCTC 2 cut(s) 296, 591
BsaJI CCNNGG 5 cut(s) 189, 213, 747, 819, 948
BsaXI ACNNNNNCTCC 2 cut(s) 882, 912
Bsc4I CCNNNNNNNGG 5 cut(s) 218, 415, 954, 1118, 1211
Bse118I RCCGGY 1 cut(s) 37
Bse3DI GCAATG 2 cut(s) 277, 472
BseBI CCWGG 2 cut(s) 86, 413
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 5 cut(s) 189, 213, 747, 819, 948
BseGI GGATG 2 cut(s) 815, 1172
BseLI CCNNNNNNNGG 5 cut(s) 218, 415, 954, 1118, 1211
BseMI GCAATG 2 cut(s) 277, 472
BseMII CTCAG 2 cut(s) 667, 711
BseRI GAGGAG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 1 cut(s) 372
BsgI GTGCAG 1 cut(s) 440
Bsh1236I CGCG 1 cut(s) 1089
BshFI GGCC 4 cut(s) 194, 222, 252, 393
BshVI ATCGAT 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 594
BsiSI CCGG 2 cut(s) 38, 164
BslFI GGGAC 3 cut(s) 865, 1093, 1203
BslI CCNNNNNNNGG 5 cut(s) 218, 415, 954, 1118, 1211
BsmAI GTCTC 3 cut(s) 230, 296, 591
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 3 cut(s) 865, 1093, 1203
BsnI GGCC 4 cut(s) 194, 222, 252, 393
Bso31I GGTCTC 2 cut(s) 296, 591
BsoBI CYCGRG 1 cut(s) 594
Bsp1286I GDGCHC 2 cut(s) 204, 595
Bsp143I GATC 7 cut(s) 133, 261, 765, 841, 958, 1037, 1069
Bsp19I CCATGG 1 cut(s) 819
BspACI CCGC 6 cut(s) 167, 275, 299, 602, 953, 1089
BspANI GGCC 4 cut(s) 194, 222, 252, 393
BspCNI CTCAG 2 cut(s) 666, 710
BspDI ATCGAT 1 cut(s) 264
BspFNI CGCG 1 cut(s) 1089
BspLI GGNNCC 4 cut(s) 251, 881, 1109, 1191
BspMI ACCTGC 2 cut(s) 412, 785
BspPI GGATC 1 cut(s) 966
BspQI GCTCTTC 1 cut(s) 209
BspTNI GGTCTC 2 cut(s) 296, 591
BsrDI GCAATG 2 cut(s) 277, 472
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 5 cut(s) 189, 213, 747, 819, 948
BssMI GATC 7 cut(s) 133, 261, 765, 841, 958, 1037, 1069
BssSI CACGAG 2 cut(s) 197, 531
BssT1I CCWWGG 4 cut(s) 189, 213, 747, 819
Bst2BI CACGAG 2 cut(s) 197, 531
Bst2UI CCWGG 2 cut(s) 86, 413
Bst4CI ACNGT 3 cut(s) 143, 674, 879
Bst6I CTCTTC 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 238
BstBAI YACGTR 1 cut(s) 827
BstC8I GCNNGC 3 cut(s) 180, 220, 284
BstDEI CTNAG 4 cut(s) 328, 653, 697, 1103
BstDSI CCRYGG 2 cut(s) 819, 948
BstEII GGTNACC 1 cut(s) 536
BstF5I GGATG 2 cut(s) 815, 1172
BstFNI CGCG 1 cut(s) 1089
BstKTI GATC 7 cut(s) 136, 264, 768, 844, 961, 1040, 1072
BstMAI GTCTC 3 cut(s) 230, 296, 591
BstMBI GATC 7 cut(s) 133, 261, 765, 841, 958, 1037, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 238, 821, 1282
BstNI CCWGG 2 cut(s) 86, 413
BstNSI RCATGY 1 cut(s) 863
BstPI GGTNACC 1 cut(s) 536
BstSCI CCNGG 3 cut(s) 84, 162, 411
BstSFI CTRYAG 2 cut(s) 142, 772
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 1 cut(s) 1089
BstV1I GCAGC 1 cut(s) 372
BstV2I GAAGAC 1 cut(s) 759
BstX2I RGATCY 1 cut(s) 958
BstYI RGATCY 1 cut(s) 958
Bsu15I ATCGAT 1 cut(s) 264
BsuRI GGCC 4 cut(s) 194, 222, 252, 393
BsuTUI ATCGAT 1 cut(s) 264
BtgI CCRYGG 2 cut(s) 819, 948
BtsCI GGATG 2 cut(s) 815, 1172
BtsIMutI CAGTG 2 cut(s) 705, 1266
BveI ACCTGC 2 cut(s) 412, 785
Cac8I GCNNGC 3 cut(s) 180, 220, 284
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 6 cut(s) 82, 193, 250, 879, 1107, 1190
ClaI ATCGAT 1 cut(s) 264
CseI GACGC 3 cut(s) 80, 103, 1163
CsiI ACCWGGT 1 cut(s) 84
CspCI CAANNNNNGTGG 2 cut(s) 424, 459
CviAII CATG 6 cut(s) 516, 571, 800, 820, 860, 978
DdeI CTNAG 4 cut(s) 328, 653, 697, 1103
DpnI GATC 7 cut(s) 135, 263, 767, 843, 960, 1039, 1071
DpnII GATC 7 cut(s) 133, 261, 765, 841, 958, 1037, 1069
DraIII CACNNNGTG 1 cut(s) 458
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
EciI GGCGGA 1 cut(s) 314
Eco130I CCWWGG 4 cut(s) 189, 213, 747, 819
Eco31I GGTCTC 2 cut(s) 296, 591
Eco47I GGWCC 4 cut(s) 82, 879, 1107, 1190
Eco57I CTGAAG 1 cut(s) 1046
Eco72I CACGTG 1 cut(s) 827
Eco88I CYCGRG 1 cut(s) 594
Eco91I GGTNACC 1 cut(s) 536
EcoO109I RGGNCCY 3 cut(s) 193, 1107, 1190
EcoO65I GGTNACC 1 cut(s) 536
EcoRI GAATTC 1 cut(s) 1200
EcoRII CCWGG 2 cut(s) 84, 411
EcoT14I CCWWGG 4 cut(s) 189, 213, 747, 819
ErhI CCWWGG 4 cut(s) 189, 213, 747, 819
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 6 cut(s) 519, 574, 803, 823, 863, 981
FaqI GGGAC 3 cut(s) 865, 1093, 1203
FatI CATG 6 cut(s) 515, 570, 799, 819, 859, 977
FauI CCCGC 3 cut(s) 609, 946, 1082
FauNDI CATATG 2 cut(s) 781, 1287
FbaI TGATCA 2 cut(s) 133, 841
FblI GTMKAC 3 cut(s) 117, 315, 1174
Fnu4HI GCNGC 1 cut(s) 361
FokI GGATG 2 cut(s) 802, 1179
Fsp4HI GCNGC 1 cut(s) 361
FspBI CTAG 2 cut(s) 542, 1128
GluI GCNGC 1 cut(s) 361
HaeIII GGCC 4 cut(s) 194, 222, 252, 393
HapII CCGG 2 cut(s) 38, 164
HgaI GACGC 3 cut(s) 80, 103, 1163
Hin1II CATG 6 cut(s) 519, 574, 803, 823, 863, 981
HincII GTYRAC 4 cut(s) 24, 316, 1048, 1175
HindII GTYRAC 4 cut(s) 24, 316, 1048, 1175
HindIII AAGCTT 1 cut(s) 1218
HinfI GANTC 1 cut(s) 20
HpaII CCGG 2 cut(s) 38, 164
HphI GGTGA 2 cut(s) 19, 43
Hpy166II GTNNAC 6 cut(s) 24, 118, 316, 830, 1048, 1175
Hpy188I TCNGA 4 cut(s) 57, 151, 523, 1282
Hpy188III TCNNGA 2 cut(s) 733, 882
Hpy8I GTNNAC 6 cut(s) 24, 118, 316, 830, 1048, 1175
Hpy99I CGWCG 2 cut(s) 96, 674
HpyCH4III ACNGT 3 cut(s) 143, 674, 879
HpyCH4IV ACGT 3 cut(s) 237, 615, 826
HpyCH4V TGCA 9 cut(s) 241, 270, 341, 421, 635, 815, 889, 1238, 1276
HpyF10VI GCNNNNNNNGC 3 cut(s) 238, 821, 1282
HpyF3I CTNAG 4 cut(s) 328, 653, 697, 1103
HpySE526I ACGT 3 cut(s) 237, 615, 826
Hsp92II CATG 6 cut(s) 519, 574, 803, 823, 863, 981
Ksp22I TGATCA 2 cut(s) 133, 841
Kzo9I GATC 7 cut(s) 133, 261, 765, 841, 958, 1037, 1069
LguI GCTCTTC 1 cut(s) 209
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 2 cut(s) 39, 824
MabI ACCWGGT 1 cut(s) 84
MaeI CTAG 2 cut(s) 542, 1128
MaeII ACGT 3 cut(s) 237, 615, 826
MaeIII GTNAC 3 cut(s) 424, 536, 928
MalI GATC 7 cut(s) 135, 263, 767, 843, 960, 1039, 1071
MboI GATC 7 cut(s) 133, 261, 765, 841, 958, 1037, 1069
MboII GAAGA 4 cut(s) 148, 196, 764, 1027
MflI RGATCY 1 cut(s) 958
MhlI GDGCHC 2 cut(s) 204, 595
MluCI AATT 3 cut(s) 707, 1027, 1200
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 99, 501
MroXI GAANNNNTTC 1 cut(s) 1220
MseI TTAA 2 cut(s) 612, 1020
MspI CCGG 2 cut(s) 38, 164
MspR9I CCNGG 3 cut(s) 86, 164, 413
MvaI CCWGG 2 cut(s) 86, 413
MvnI CGCG 1 cut(s) 1089
MwoI GCNNNNNNNGC 3 cut(s) 238, 821, 1282
NciI CCSGG 1 cut(s) 164
NcoI CCATGG 1 cut(s) 819
NdeI CATATG 2 cut(s) 781, 1287
NdeII GATC 7 cut(s) 133, 261, 765, 841, 958, 1037, 1069
NlaIII CATG 6 cut(s) 519, 574, 803, 823, 863, 981
NlaIV GGNNCC 4 cut(s) 251, 881, 1109, 1191
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 2 cut(s) 424, 928
NspI RCATGY 1 cut(s) 863
PciI ACATGT 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 1220
PkrI GCNGC 1 cut(s) 362
PleI GAGTC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 827
PmlI CACGTG 1 cut(s) 827
PpsI GAGTC 1 cut(s) 28
Ppu21I YACGTR 1 cut(s) 827
PpuMI RGGWCCY 2 cut(s) 1107, 1190
PscI ACATGT 1 cut(s) 859
Psp1406I AACGTT 1 cut(s) 615
Psp5II RGGWCCY 2 cut(s) 1107, 1190
Psp6I CCWGG 2 cut(s) 84, 411
PspCI CACGTG 1 cut(s) 827
PspEI GGTNACC 1 cut(s) 536
PspGI CCWGG 2 cut(s) 84, 411
PspN4I GGNNCC 4 cut(s) 251, 881, 1109, 1191
PspPI GGNCC 6 cut(s) 82, 193, 250, 879, 1107, 1190
PspPPI RGGWCCY 2 cut(s) 1107, 1190
PsuI RGATCY 1 cut(s) 958
SalI GTCGAC 2 cut(s) 314, 1173
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 2 cut(s) 612, 1020
SatI GCNGC 1 cut(s) 361
Sau3AI GATC 7 cut(s) 133, 261, 765, 841, 958, 1037, 1069
Sau96I GGNCC 6 cut(s) 82, 193, 250, 879, 1107, 1190
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 3 cut(s) 86, 164, 413
SduI GDGCHC 2 cut(s) 204, 595
SexAI ACCWGGT 1 cut(s) 84
SfaNI GCATC 2 cut(s) 39, 824
SfcI CTRYAG 2 cut(s) 142, 772
SinI GGWCC 4 cut(s) 82, 879, 1107, 1190
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 1127
Sse9I AATT 3 cut(s) 707, 1027, 1200
SsiI CCGC 6 cut(s) 167, 275, 299, 602, 953, 1089
SspI AATATT 1 cut(s) 559
SspMI CTAG 2 cut(s) 542, 1128
StyD4I CCNGG 3 cut(s) 84, 162, 411
StyI CCWWGG 4 cut(s) 189, 213, 747, 819
TaaI ACNGT 3 cut(s) 143, 674, 879
TaiI ACGT 3 cut(s) 240, 618, 829
TaqI TCGA 5 cut(s) 159, 264, 315, 1013, 1174
TasI AATT 3 cut(s) 707, 1027, 1200
Tru1I TTAA 2 cut(s) 612, 1020
Tru9I TTAA 2 cut(s) 612, 1020
TscAI CASTG 2 cut(s) 705, 1266
TseFI GTSAC 2 cut(s) 424, 928
TseI GCWGC 1 cut(s) 360
Tsp45I GTSAC 2 cut(s) 424, 928
TspDTI ATGAA 3 cut(s) 17, 1042, 1304
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 2 cut(s) 705, 1266
VpaK11BI GGWCC 4 cut(s) 82, 879, 1107, 1190
XapI RAATTY 1 cut(s) 1200
XceI RCATGY 1 cut(s) 863
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmiI GTMKAC 3 cut(s) 117, 315, 1174
XmnI GAANNNNTTC 1 cut(s) 1220
XspI CTAG 2 cut(s) 542, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.