Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0022401

Physical Location & Seq

Genomic Coordinates Forward (+)

19318071 .. 19322024

Gene Structure 3954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGACGGAGAAGGTCATGAAGGTGAGCGTGAGGGATTCAACGATGGTGAAGCCGGTGGAGGAGATGCCTCCGAGAGCATTGTGGTTGTCCAACTTGGACCGGCTGTGTCGTGTCAATCACACGCCGAGCGTCCACTTCTACAAGCCTGATCAAAACTGTATGTCAAACTTCTTCGACCCGGCGGTGCTAAAGCACGCGCTATCCAAGGCCCTCGTGCTCTTCTACCCCTTGGCTGGCCGTCTCAAGCAAAACGGGGGCCGTTTGGAGATCGATTGCAATGCAGAGGGCGTGCTGTTTGTTGTGGCGGAGACCACCTCTGTTGACCTTGACTACTTAGGCGACTTTGCACCCACTGACGAGTTCAGCAACCTCATTCCCTCTGTTGATAGTTCCGTTGGCCTTTCCTCTTATCCCCTCCTGGTGTTGCAGGTCACACACTTCGAATGCGGTGGAGTGGGAGTTGGTGTTGGTATGTCACATTGCGTAGCTGATGGAGTTTCTGGTTTCCACTTTATGAATACATGGTCGGAAATGGCTCGTGGTAATCTTGATGACCTTACAAATATTCCACCATACATAGACAGGACATTACTTCGTGCCCAAGACCTGCCTCAGCCTAACGTTGAGTACCAACCTTTTGCAACCCCAAAAAAACCTCTCTGCGGCACAAAAGAAGGTGGTGTTGAGAGCACAACAGTCTCAATGTTCAGATTGACGAGGGACCAACTCAATATCTTGAAAGCCAAGTCTAAGGAAGATGGGAACACGATCGACTATAGCACATATGAGATATTAGCAGGTCAAGTTTGGAAATCTGCATCCAAGGCACGTGAACTTCCCGTTGATCAAAAGACCAACCTACGTGTTGTTGTTGAGGGACGTTCCCGACTGCAACCCCCACTCCCACTTGGTTTCTTTGGCAATGTGATTGTCCCAGCTACCATTATTTCCACGGTGGGGGATCTCCAATCAAAACCAACATGGTATGCTTCAAGTTGTATTCACAATGCTATATCGCAGATTAACGACAATTATTTTAGATCAGCAATTGACTTCCTTGAGCTTCAGCCTGATATTTCAGCCCTTGCTGTCACGGCTGATTCTCTTAGGTCCCCTAATCTTGGAATAACTAGTTGGGTTAGGTTGCCATCTTACGACGTTGATTTCGGATGGGGTCGACCTATTTTTGTGGGACCTTGTGGAATTCCATTTGAGGGAAAGGCTTTCGTATTAGGAAGTGCAACTAACGATGGGAGTTTATCAGTCGTCATTCGTCTGCAATCCAAGCATATGAAATCATTTTCAAAGTTGTTCTATGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

442

Amino Acids

48.6

Weight (kDa)

5.94

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022401)

Species	Orthologous Gene IDs
malus_domestica	MD04G1188400.v1.1
pyrus_communis	pycom04g16630 pycom04g16670 pycom04g16680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	418, 615, 788
AccI	GTMKAC	1 cut(s)	1177
AccII	CGCG	1 cut(s)	197
AciI	CCGC	4 cut(s)	182, 305, 447, 663
AclI	AACGTT	1 cut(s)	621
AclWI	GGATC	1 cut(s)	969
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	1203
AcuI	CTGAAG	1 cut(s)	1049
AcvI	CACGTG	1 cut(s)	830
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	5 cut(s)	233, 662, 957, 1121, 1214
AflIII	ACRYGT	1 cut(s)	862
AgsI	TTSAA	4 cut(s)	39, 739, 993, 1305
AhlI	ACTAGT	1 cut(s)	1130
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	1117, 1149
AluBI	AGCT	3 cut(s)	488, 938, 1063
AluI	AGCT	3 cut(s)	488, 938, 1063
Alw21I	GWGCWC	2 cut(s)	219, 692
Alw26I	GTCTC	3 cut(s)	245, 302, 703
AlwI	GGATC	1 cut(s)	969
AoxI	GGCC	4 cut(s)	207, 235, 256, 397
ApoI	RAATTY	1 cut(s)	1203
ArsI	GACNNNNNNTTYG	2 cut(s)	1148, 1180
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	6 cut(s)	97, 208, 256, 721, 1110, 1193
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	34, 58
AsuII	TTCGAA	1 cut(s)	441
AvaII	GGWCC	4 cut(s)	97, 721, 1110, 1193
BaeGI	GKGCMC	1 cut(s)	601
BauI	CACGAG	2 cut(s)	212, 537
BbrPI	CACGTG	1 cut(s)	830
Bbv12I	GWGCWC	2 cut(s)	219, 692
BbvCI	CCTCAGC	1 cut(s)	612
BccI	CCATC	6 cut(s)	37, 485, 752, 1156, 1164, 1244
BceAI	ACGGC	3 cut(s)	222, 243, 1110
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	1 cut(s)	419
BclI	TGATCA	2 cut(s)	148, 844
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	3 cut(s)	245, 302, 703
BcuI	ACTAGT	1 cut(s)	1130
BfaI	CTAG	1 cut(s)	1131
BfmI	CTRYAG	1 cut(s)	775
BfuAI	ACCTGC	3 cut(s)	418, 615, 788
BisI	GCNGC	1 cut(s)	664
BlsI	GCNGC	1 cut(s)	665
Bme1390I	CCNGG	2 cut(s)	179, 419
Bme18I	GGWCC	4 cut(s)	97, 721, 1110, 1193
BmgT120I	GGNCC	6 cut(s)	97, 208, 256, 721, 1110, 1193
BmiI	GGNNCC	4 cut(s)	257, 722, 1112, 1194
BmrFI	CCNGG	2 cut(s)	179, 419
BmsI	GCATC	2 cut(s)	54, 827
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
Bpu10I	CCTNAGC	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	441
BpuEI	CTTGAG	2 cut(s)	227, 1079
BpuMI	CCSGG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	270
BsaAI	YACGTR	2 cut(s)	830, 863
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	4 cut(s)	204, 228, 822, 951
BsaXI	ACNNNNNCTCC	6 cut(s)	444, 450, 474, 480, 885, 915
Bsc4I	CCNNNNNNNGG	5 cut(s)	233, 662, 957, 1121, 1214
Bse118I	RCCGGY	2 cut(s)	52, 99
Bse3DI	GCAATG	3 cut(s)	283, 478, 928
BseBI	CCWGG	1 cut(s)	419
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	4 cut(s)	204, 228, 822, 951
BseGI	GGATG	2 cut(s)	818, 1175
BseLI	CCNNNNNNNGG	5 cut(s)	233, 662, 957, 1121, 1214
BseMI	GCAATG	3 cut(s)	283, 478, 928
BseMII	CTCAG	1 cut(s)	626
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	601
BseYI	CCCAGC	1 cut(s)	934
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	771
BshFI	GGCC	4 cut(s)	209, 237, 258, 399
BshVI	ATCGAT	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	771
BsiHKAI	GWGCWC	2 cut(s)	219, 692
BsiSI	CCGG	3 cut(s)	53, 100, 179
BslFI	GGGAC	5 cut(s)	734, 891, 917, 1096, 1206
BslI	CCNNNNNNNGG	5 cut(s)	233, 662, 957, 1121, 1214
BsmAI	GTCTC	3 cut(s)	245, 302, 703
BsmBI	CGTCTC	1 cut(s)	245
BsmFI	GGGAC	5 cut(s)	734, 891, 917, 1096, 1206
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	4 cut(s)	209, 237, 258, 399
Bso31I	GGTCTC	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	441
Bsp1286I	GDGCHC	3 cut(s)	219, 601, 692
Bsp143I	GATC	6 cut(s)	148, 267, 768, 844, 961, 1040
BspACI	CCGC	4 cut(s)	182, 305, 447, 663
BspANI	GGCC	4 cut(s)	209, 237, 258, 399
BspCNI	CTCAG	1 cut(s)	625
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	197
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	4 cut(s)	257, 722, 1112, 1194
BspMI	ACCTGC	3 cut(s)	418, 615, 788
BspPI	GGATC	1 cut(s)	969
BspQI	GCTCTTC	1 cut(s)	224
BspT104I	TTCGAA	1 cut(s)	441
BspTNI	GGTCTC	1 cut(s)	302
BsrDI	GCAATG	3 cut(s)	283, 478, 928
BsrFI	RCCGGY	2 cut(s)	52, 99
BssAI	RCCGGY	2 cut(s)	52, 99
BssECI	CCNNGG	4 cut(s)	204, 228, 822, 951
BssMI	GATC	6 cut(s)	148, 267, 768, 844, 961, 1040
BssSI	CACGAG	2 cut(s)	212, 537
BssT1I	CCWWGG	3 cut(s)	204, 228, 822
Bst2BI	CACGAG	2 cut(s)	212, 537
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	3 cut(s)	158, 697, 955
Bst6I	CTCTTC	1 cut(s)	224
BstBAI	YACGTR	2 cut(s)	830, 863
BstBI	TTCGAA	1 cut(s)	441
BstC8I	GCNNGC	3 cut(s)	195, 235, 290
BstDEI	CTNAG	4 cut(s)	334, 612, 750, 1106
BstDSI	CCRYGG	1 cut(s)	951
BstF5I	GGATG	2 cut(s)	818, 1175
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	6 cut(s)	151, 270, 771, 847, 964, 1043
BstMAI	GTCTC	3 cut(s)	245, 302, 703
BstMBI	GATC	6 cut(s)	148, 267, 768, 844, 961, 1040
BstMCI	CGRYCG	1 cut(s)	771
BstMWI	GCNNNNNNNGC	3 cut(s)	824, 1094, 1285
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	177, 417
BstSFI	CTRYAG	1 cut(s)	775
BstSLI	GKGCMC	1 cut(s)	601
BstUI	CGCG	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	961
BstYI	RGATCY	1 cut(s)	961
Bsu15I	ATCGAT	1 cut(s)	270
BsuRI	GGCC	4 cut(s)	209, 237, 258, 399
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	951
BtsCI	GGATG	2 cut(s)	818, 1175
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	3 cut(s)	418, 615, 788
Cac8I	GCNNGC	3 cut(s)	195, 235, 290
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	2 cut(s)	52, 99
Cfr13I	GGNCC	6 cut(s)	97, 208, 256, 721, 1110, 1193
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	628
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	3 cut(s)	16, 522, 981
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	4 cut(s)	334, 612, 750, 1106
DpnI	GATC	6 cut(s)	150, 269, 770, 846, 963, 1042
DpnII	GATC	6 cut(s)	148, 267, 768, 844, 961, 1040
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	1 cut(s)	320
Eco130I	CCWWGG	3 cut(s)	204, 228, 822
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	4 cut(s)	97, 721, 1110, 1193
Eco57I	CTGAAG	1 cut(s)	1049
Eco72I	CACGTG	1 cut(s)	830
EcoO109I	RGGNCCY	3 cut(s)	208, 1110, 1193
EcoRI	GAATTC	1 cut(s)	1203
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	3 cut(s)	204, 228, 822
ErhI	CCWWGG	3 cut(s)	204, 228, 822
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	3 cut(s)	19, 525, 984
FaqI	GGGAC	5 cut(s)	734, 891, 917, 1096, 1206
FatI	CATG	3 cut(s)	15, 521, 980
FauNDI	CATATG	2 cut(s)	784, 1290
FbaI	TGATCA	2 cut(s)	148, 844
FblI	GTMKAC	1 cut(s)	1177
Fnu4HI	GCNGC	1 cut(s)	664
FokI	GGATG	2 cut(s)	805, 1182
Fsp4HI	GCNGC	1 cut(s)	664
FspBI	CTAG	1 cut(s)	1131
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	664
GsaI	CCCAGC	1 cut(s)	938
HaeIII	GGCC	4 cut(s)	209, 237, 258, 399
HapII	CCGG	3 cut(s)	53, 100, 179
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	3 cut(s)	19, 525, 984
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	2 cut(s)	322, 1178
HindII	GTYRAC	2 cut(s)	322, 1178
HinfI	GANTC	2 cut(s)	35, 1100
HpaII	CCGG	3 cut(s)	53, 100, 179
HphI	GGTGA	2 cut(s)	34, 58
Hpy166II	GTNNAC	4 cut(s)	133, 322, 833, 1178
Hpy188I	TCNGA	4 cut(s)	72, 529, 710, 1169
Hpy188III	TCNNGA	4 cut(s)	16, 548, 736, 885
Hpy8I	GTNNAC	4 cut(s)	133, 322, 833, 1178
Hpy99I	CGWCG	1 cut(s)	1160
HpyAV	CCTTC	3 cut(s)	4, 13, 668
HpyCH4III	ACNGT	3 cut(s)	158, 697, 955
HpyCH4IV	ACGT	5 cut(s)	621, 829, 862, 880, 1158
HpyCH4V	TGCA	9 cut(s)	276, 281, 347, 427, 641, 818, 892, 1241, 1279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	824, 1094, 1285
HpyF3I	CTNAG	4 cut(s)	334, 612, 750, 1106
HpySE526I	ACGT	5 cut(s)	621, 829, 862, 880, 1158
Hsp92II	CATG	3 cut(s)	19, 525, 984
HspAI	GCGC	1 cut(s)	197
Ksp22I	TGATCA	2 cut(s)	148, 844
Kzo9I	GATC	6 cut(s)	148, 267, 768, 844, 961, 1040
LguI	GCTCTTC	1 cut(s)	224
LweI	GCATC	2 cut(s)	54, 827
MaeI	CTAG	1 cut(s)	1131
MaeII	ACGT	5 cut(s)	621, 829, 862, 880, 1158
MaeIII	GTNAC	3 cut(s)	430, 474, 1090
MalI	GATC	6 cut(s)	150, 269, 770, 846, 963, 1042
MboI	GATC	6 cut(s)	148, 267, 768, 844, 961, 1040
MboII	GAAGA	3 cut(s)	163, 211, 767
MfeI	CAATTG	1 cut(s)	1047
MflI	RGATCY	1 cut(s)	961
MhlI	GDGCHC	3 cut(s)	219, 601, 692
MluCI	AATT	3 cut(s)	1030, 1047, 1203
MmeI	TCCRAC	2 cut(s)	114, 507
MseI	TTAA	1 cut(s)	1023
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	3 cut(s)	53, 100, 179
MspR9I	CCNGG	2 cut(s)	179, 419
MunI	CAATTG	1 cut(s)	1047
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	824, 1094, 1285
NciI	CCSGG	1 cut(s)	179
NdeI	CATATG	2 cut(s)	784, 1290
NdeII	GATC	6 cut(s)	148, 267, 768, 844, 961, 1040
NlaIII	CATG	3 cut(s)	19, 525, 984
NlaIV	GGNNCC	4 cut(s)	257, 722, 1112, 1194
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	3 cut(s)	430, 474, 1090
NspV	TTCGAA	1 cut(s)	441
PagI	TCATGA	1 cut(s)	15
PciSI	GCTCTTC	1 cut(s)	224
PctI	GAATGC	1 cut(s)	449
PfeI	GAWTC	2 cut(s)	35, 1100
PkrI	GCNGC	1 cut(s)	665
Ple19I	CGATCG	1 cut(s)	771
PmaCI	CACGTG	1 cut(s)	830
PmlI	CACGTG	1 cut(s)	830
Ppu21I	YACGTR	2 cut(s)	830, 863
PpuMI	RGGWCCY	2 cut(s)	1110, 1193
Psp1406I	AACGTT	1 cut(s)	621
Psp5II	RGGWCCY	2 cut(s)	1110, 1193
Psp6I	CCWGG	1 cut(s)	417
PspCI	CACGTG	1 cut(s)	830
PspFI	CCCAGC	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	4 cut(s)	257, 722, 1112, 1194
PspPI	GGNCC	6 cut(s)	97, 208, 256, 721, 1110, 1193
PspPPI	RGGWCCY	2 cut(s)	1110, 1193
PsuI	RGATCY	1 cut(s)	961
PvuI	CGATCG	1 cut(s)	771
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	1176
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	1023
SatI	GCNGC	1 cut(s)	664
Sau3AI	GATC	6 cut(s)	148, 267, 768, 844, 961, 1040
Sau96I	GGNCC	6 cut(s)	97, 208, 256, 721, 1110, 1193
ScrFI	CCNGG	2 cut(s)	179, 419
SduI	GDGCHC	3 cut(s)	219, 601, 692
SfaNI	GCATC	2 cut(s)	54, 827
SfcI	CTRYAG	1 cut(s)	775
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	4 cut(s)	97, 721, 1110, 1193
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	242, 1058
SmoI	CTYRAG	2 cut(s)	242, 1058
SpeI	ACTAGT	1 cut(s)	1130
Sse9I	AATT	3 cut(s)	1030, 1047, 1203
SsiI	CCGC	4 cut(s)	182, 305, 447, 663
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	1 cut(s)	1131
StyD4I	CCNGG	2 cut(s)	177, 417
StyI	CCWWGG	3 cut(s)	204, 228, 822
TaaI	ACNGT	3 cut(s)	158, 697, 955
TaiI	ACGT	5 cut(s)	624, 832, 865, 883, 1161
TaqI	TCGA	5 cut(s)	174, 270, 441, 771, 1177
TasI	AATT	3 cut(s)	1030, 1047, 1203
TauI	GCSGC	1 cut(s)	666
TfiI	GAWTC	2 cut(s)	35, 1100
Tru1I	TTAA	1 cut(s)	1023
Tru9I	TTAA	1 cut(s)	1023
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	3 cut(s)	430, 474, 1090
Tsp45I	GTSAC	3 cut(s)	430, 474, 1090
TspDTI	ATGAA	3 cut(s)	32, 530, 1307
TspGWI	ACGGA	2 cut(s)	20, 382
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	4 cut(s)	97, 721, 1110, 1193
XapI	RAATTY	1 cut(s)	1203
XmiI	GTMKAC	1 cut(s)	1177
XspI	CTAG	1 cut(s)	1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.