Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0020390

Physical Location & Seq

Genomic Coordinates Reverse (-)

31711219 .. 31712883

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1238900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGAGATGCGCTTGTCCAAGCGAAAATCAAACTGCAGAAGGGATTACATCCCTGCTGACATATATAGTAGCAATGAACGATACAGTTACAACAATCGGAGAGATGTTTGGGGTCAACAGTCAAAGTATACTGGACGCAAATTTGTTGTCACGGGACAGCATTATCGACCCTAATACAACCGTTCTTGTTCCCCTCAAAAGCAACAAATGCCCTACTTCTGATGGTAATTTCGTTGCAGATGGGAGTATCCTAGAATATGTCGATTGCATTTCCAAAGGCAAAAAGTTTCCGGTGAAGTTGGTCACACTGCTAGGTATACATATCAATCCTCTAGATCTTACACAGTCTAGCAGGCCGAATTACAAAAATGCATCAATTATTGGGATTGGGTTTGCATTCATATGCGTGTTCCTTTTATGCTACTATTTATATCAATGCGTGAAGAGAAGGAGAACCAAAACCCGTAAGGAGAAAATTTTCAAGCAAAATGGGGGCTTCTTGTTGCGAGAGAAATTCTCATCTTATGGAATTAGTAGCAATGCAAAACTATTTACTGCAGAGGAGTTGGAAAGAGCAACAGATAACTACAACGAGAGCCGGTTTCTAGGGGAAGGAGGTTATGGCACAGTTTATAAAGGGATGTTACCTGACGGTACCATAGTAGCGGTTAAAAGGTCAAGGGCGATAGACGATAATCAGATTGAGCAATTCATCAATGAAGTTGTCATTCTAACTCAAATCAATCATCGAAACATCGTGAAATTGCTTGGTTGTTGTTTGGAGACGGAGGTTCCATTGCTAGTATATGAGTATATTTCTAATGGAACTCTCTTCTATCATATCCGTCAGAAGAAAGACTCCACCGAATCATCACTTTCGTGGGAATACCGTTTAAGAATCGCTTGTGAAGTTGCCGGAGCAGTAGCGTATATGCACTCAGCAGCTTCAATCCCCATCTATCATAGAGACATCAAGTCGTCTAACATACTTCTAGACCATAACTACAGTGCTAAAGTATCCGACTTTGGGACTTCCAAATCAGTTCCCCTTGTCAAAACTCACTTGACGACACAGGTACAGGGGACTTTCGGGTACATGGATCCCGAGTACTTCCAATCTTGTAAGTTCACAGACAGAAGTGATACCTACAGCTTCGGAGTTACGCTCGTGGAGATACTAACTGGACACACCCCATATTCTTTTGCAAAACATGAAGGAAAAAACCTGGTTGCATCGTTCATTTCATTGACGAGGGAAGATGAACTCGTTCAGATTATGGATCCTCAAGTGGCTAGAGATGCAGATGTTGAGCAAATTCGCACGATTGCAGAGCTTGCAAAACGGTGTTTGAGGCTGAATGGGGCAAAGAGGCCTAGTATGAAAGAGGTATCAACAGAGTTGGAAGGATTGAGGAACGCTCAAAGATGCCATGAAACGTTCCGAGAAGATCCTATAGAGCAAAACATTGATTTCCCCATGGAAATTGAATCTGCATCGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030312 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

501

Amino Acids

56.16

Weight (kDa)

6.4

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM3_LYK4_5	PF23473	18 - 65	2.1e-16	LYK4/5 LysM3 domain
Pkinase	PF00069	196 - 463	7.6e-50	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	200 - 467	7.7e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020390)

Species	Orthologous Gene IDs
malus_domestica	MD04G1238700.v1.1 MD04G1238900.v1.1 MD04G1239000.v1.1 MD04G1239400.v1.1
prunus_persica	Prupe.6G357200_v2.0.a1
pyrus_communis	pycom04g21140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
Acc65I	GGTACC	1 cut(s)	653
AccB1I	GGYRCC	1 cut(s)	653
AccI	GTMKAC	2 cut(s)	127, 316
AciI	CCGC	1 cut(s)	665
AclI	AACGTT	1 cut(s)	1436
AclWI	GGATC	5 cut(s)	1094, 1107, 1274, 1287, 1442
AcsI	RAATTY	4 cut(s)	139, 474, 512, 1314
AfaI	GTAC	4 cut(s)	655, 1077, 1094, 1109
AfiI	CCNNNNNNNGG	1 cut(s)	1026
AgsI	TTSAA	3 cut(s)	481, 948, 1487
AhdI	GACNNNNNGTC	1 cut(s)	973
AjnI	CCWGG	1 cut(s)	1224
AleI	CACNNNNGTG	1 cut(s)	877
AluBI	AGCT	3 cut(s)	944, 1152, 1333
AluI	AGCT	3 cut(s)	944, 1152, 1333
Alw26I	GTCTC	2 cut(s)	776, 960
AlwI	GGATC	5 cut(s)	1094, 1107, 1274, 1287, 1442
Ama87I	CYCGRG	1 cut(s)	1103
AoxI	GGCC	2 cut(s)	353, 1370
ApeKI	GCWGC	1 cut(s)	941
ApoI	RAATTY	4 cut(s)	139, 474, 512, 1314
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
Asp700I	GAANNNNTTC	2 cut(s)	476, 1266
Asp718I	GGTACC	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	1103
BaeI	ACNNNNGTAYC	2 cut(s)	645, 678
BamHI	GGATCC	2 cut(s)	1099, 1279
BanI	GGYRCC	1 cut(s)	653
BauI	CACGAG	1 cut(s)	1166
BbvI	GCAGC	1 cut(s)	953
BccI	CCATC	3 cut(s)	215, 233, 962
BciT130I	CCWGG	1 cut(s)	1226
BciVI	GTATCC	2 cut(s)	257, 1027
BcoDI	GTCTC	2 cut(s)	776, 960
BfaI	CTAG	9 cut(s)	251, 311, 332, 348, 605, 800, 992, 1293, 1374
BfmI	CTRYAG	5 cut(s)	33, 555, 1003, 1147, 1452
BfuI	GTATCC	2 cut(s)	257, 1027
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	1 cut(s)	942
BlsI	GCNGC	1 cut(s)	943
BmcAI	AGTACT	1 cut(s)	1109
Bme1390I	CCNGG	1 cut(s)	1226
BmeRI	GACNNNNNGTC	1 cut(s)	973
BmeT110I	CYCGRG	1 cut(s)	1103
BmiI	GGNNCC	4 cut(s)	655, 792, 1101, 1281
BmrFI	CCNGG	1 cut(s)	1226
BmsI	GCATC	4 cut(s)	380, 1241, 1288, 1415
BplI	GAGNNNNNCTC	6 cut(s)	500, 532, 1149, 1181, 1402, 1434
BpuEI	CTTGAG	1 cut(s)	1269
BsaJI	CCNNGG	1 cut(s)	1476
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	1026
Bse118I	RCCGGY	1 cut(s)	597
Bse1I	ACTGG	2 cut(s)	135, 1186
Bse3DI	GCAATG	3 cut(s)	78, 544, 794
BseBI	CCWGG	1 cut(s)	1226
BseDI	CCNNGG	1 cut(s)	1476
BseGI	GGATG	2 cut(s)	47, 645
BseLI	CCNNNNNNNGG	1 cut(s)	1026
BseMI	GCAATG	3 cut(s)	78, 544, 794
BseMII	CTCAG	1 cut(s)	951
BseNI	ACTGG	2 cut(s)	135, 1186
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	1 cut(s)	953
BshFI	GGCC	2 cut(s)	355, 1372
BshNI	GGYRCC	1 cut(s)	653
BsiHKCI	CYCGRG	1 cut(s)	1103
BsiSI	CCGG	3 cut(s)	290, 598, 915
BslFI	GGGAC	3 cut(s)	167, 1042, 1096
BslI	CCNNNNNNNGG	1 cut(s)	1026
BsmAI	GTCTC	2 cut(s)	776, 960
BsmBI	CGTCTC	1 cut(s)	776
BsmFI	GGGAC	3 cut(s)	167, 1042, 1096
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	355, 1372
BsoBI	CYCGRG	1 cut(s)	1103
Bsp143I	GATC	4 cut(s)	334, 1099, 1279, 1447
Bsp19I	CCATGG	1 cut(s)	1476
BspACI	CCGC	1 cut(s)	665
BspANI	GGCC	2 cut(s)	355, 1372
BspCNI	CTCAG	1 cut(s)	950
BspLI	GGNNCC	4 cut(s)	655, 792, 1101, 1281
BspMAI	CTGCAG	2 cut(s)	37, 559
BspPI	GGATC	5 cut(s)	1094, 1107, 1274, 1287, 1442
BspT107I	GGYRCC	1 cut(s)	653
BsrDI	GCAATG	3 cut(s)	78, 544, 794
BsrFI	RCCGGY	1 cut(s)	597
BsrI	ACTGG	2 cut(s)	135, 1186
BssAI	RCCGGY	1 cut(s)	597
BssECI	CCNNGG	1 cut(s)	1476
BssMI	GATC	4 cut(s)	334, 1099, 1279, 1447
BssNAI	GTATAC	2 cut(s)	128, 317
BssSI	CACGAG	1 cut(s)	1166
BssT1I	CCWWGG	1 cut(s)	1476
Bst1107I	GTATAC	2 cut(s)	128, 317
Bst2BI	CACGAG	1 cut(s)	1166
Bst2UI	CCWGG	1 cut(s)	1226
Bst4CI	ACNGT	9 cut(s)	85, 119, 181, 345, 628, 653, 890, 1007, 1344
Bst6I	CTCTTC	2 cut(s)	437, 836
BstAPI	GCANNNNNTGC	2 cut(s)	207, 1334
BstC8I	GCNNGC	2 cut(s)	353, 1335
BstDEI	CTNAG	1 cut(s)	937
BstDSI	CCRYGG	1 cut(s)	1476
BstF5I	GGATG	2 cut(s)	47, 645
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	4 cut(s)	337, 1102, 1282, 1450
BstMAI	GTCTC	2 cut(s)	776, 960
BstMBI	GATC	4 cut(s)	334, 1099, 1279, 1447
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 1298, 1334
BstNI	CCWGG	1 cut(s)	1226
BstSCI	CCNGG	1 cut(s)	1224
BstSFI	CTRYAG	5 cut(s)	33, 555, 1003, 1147, 1452
BstV1I	GCAGC	1 cut(s)	953
BstX2I	RGATCY	4 cut(s)	334, 1099, 1279, 1447
BstYI	RGATCY	4 cut(s)	334, 1099, 1279, 1447
BstZ17I	GTATAC	2 cut(s)	128, 317
BsuI	GTATCC	2 cut(s)	257, 1027
BsuRI	GGCC	2 cut(s)	355, 1372
BtgI	CCRYGG	1 cut(s)	1476
BtgZI	GCGATG	1 cut(s)	1479
BtsCI	GGATG	2 cut(s)	47, 645
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	305, 1012
Cac8I	GCNNGC	2 cut(s)	353, 1335
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	597
CseI	GACGC	1 cut(s)	143
CsiI	ACCWGGT	1 cut(s)	1224
Csp6I	GTAC	4 cut(s)	654, 1076, 1093, 1108
CviAII	CATG	4 cut(s)	1096, 1211, 1430, 1477
CviJI	RGCY	9 cut(s)	355, 495, 597, 944, 1152, 1292, 1333, 1354, 1372
CviKI_1	RGCY	9 cut(s)	355, 495, 597, 944, 1152, 1292, 1333, 1354, 1372
CviQI	GTAC	4 cut(s)	654, 1076, 1093, 1108
DdeI	CTNAG	1 cut(s)	937
DpnI	GATC	4 cut(s)	336, 1101, 1281, 1449
DpnII	GATC	4 cut(s)	334, 1099, 1279, 1447
DriI	GACNNNNNGTC	1 cut(s)	973
Eam1104I	CTCTTC	2 cut(s)	437, 836
Eam1105I	GACNNNNNGTC	1 cut(s)	973
EarI	CTCTTC	2 cut(s)	437, 836
Eco130I	CCWWGG	1 cut(s)	1476
Eco147I	AGGCCT	1 cut(s)	1372
Eco88I	CYCGRG	1 cut(s)	1103
EcoRII	CCWGG	1 cut(s)	1224
EcoT14I	CCWWGG	1 cut(s)	1476
EcoT22I	ATGCAT	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	1476
Esp3I	CGTCTC	1 cut(s)	776
FaeI	CATG	4 cut(s)	1099, 1214, 1433, 1480
FalI	AAGNNNNNCTT	2 cut(s)	886, 918
FaqI	GGGAC	3 cut(s)	167, 1042, 1096
FatI	CATG	4 cut(s)	1095, 1210, 1429, 1476
FauNDI	CATATG	1 cut(s)	401
FblI	GTMKAC	2 cut(s)	127, 316
Fnu4HI	GCNGC	1 cut(s)	942
FokI	GGATG	2 cut(s)	34, 652
Fsp4HI	GCNGC	1 cut(s)	942
FspBI	CTAG	9 cut(s)	251, 311, 332, 348, 605, 800, 992, 1293, 1374
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	942
HaeIII	GGCC	2 cut(s)	355, 1372
HapII	CCGG	3 cut(s)	290, 598, 915
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	4 cut(s)	1099, 1214, 1433, 1480
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	4 cut(s)	857, 866, 897, 1487
HpaII	CCGG	3 cut(s)	290, 598, 915
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	4 cut(s)	115, 128, 317, 1128
Hpy188I	TCNGA	8 cut(s)	98, 220, 699, 849, 1021, 1157, 1272, 1442
Hpy188III	TCNNGA	4 cut(s)	332, 757, 992, 1103
Hpy8I	GTNNAC	4 cut(s)	115, 128, 317, 1128
HpyAV	CCTTC	5 cut(s)	32, 441, 605, 1208, 1397
HpyCH4III	ACNGT	9 cut(s)	85, 119, 181, 345, 628, 653, 890, 1007, 1344
HpyCH4IV	ACGT	1 cut(s)	1436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 1298, 1334
HpyF3I	CTNAG	1 cut(s)	937
HpySE526I	ACGT	1 cut(s)	1436
Hsp92II	CATG	4 cut(s)	1099, 1214, 1433, 1480
HspAI	GCGC	1 cut(s)	9
KpnI	GGTACC	1 cut(s)	657
Kzo9I	GATC	4 cut(s)	334, 1099, 1279, 1447
LmnI	GCTCC	1 cut(s)	917
Lsp1109I	GCAGC	1 cut(s)	953
LweI	GCATC	4 cut(s)	380, 1241, 1288, 1415
MabI	ACCWGGT	1 cut(s)	1224
MaeI	CTAG	9 cut(s)	251, 311, 332, 348, 605, 800, 992, 1293, 1374
MaeII	ACGT	1 cut(s)	1436
MaeIII	GTNAC	5 cut(s)	85, 147, 301, 642, 1159
MalI	GATC	4 cut(s)	336, 1101, 1281, 1449
MboI	GATC	4 cut(s)	334, 1099, 1279, 1447
MboII	GAAGA	5 cut(s)	454, 823, 862, 1268, 1457
MflI	RGATCY	4 cut(s)	334, 1099, 1279, 1447
MlyI	GAGTC	1 cut(s)	851
MmeI	TCCRAC	3 cut(s)	546, 1044, 1380
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	2 cut(s)	476, 1266
MseI	TTAA	2 cut(s)	669, 893
MslI	CAYNNNNRTG	3 cut(s)	400, 404, 877
MspI	CCGG	3 cut(s)	290, 598, 915
MspR9I	CCNGG	1 cut(s)	1226
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	1226
MwoI	GCNNNNNNNGC	3 cut(s)	207, 1298, 1334
NcoI	CCATGG	1 cut(s)	1476
NdeI	CATATG	1 cut(s)	401
NdeII	GATC	4 cut(s)	334, 1099, 1279, 1447
NlaIII	CATG	4 cut(s)	1099, 1214, 1433, 1480
NlaIV	GGNNCC	4 cut(s)	655, 792, 1101, 1281
NmuCI	GTSAC	2 cut(s)	147, 301
NsiI	ATGCAT	1 cut(s)	373
OliI	CACNNNNGTG	1 cut(s)	877
PceI	AGGCCT	1 cut(s)	1372
PctI	GAATGC	1 cut(s)	395
PdmI	GAANNNNTTC	2 cut(s)	476, 1266
PfeI	GAWTC	3 cut(s)	866, 897, 1487
PkrI	GCNGC	1 cut(s)	943
PleI	GAGTC	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	851
PsiI	TTATAA	1 cut(s)	633
Psp1406I	AACGTT	1 cut(s)	1436
Psp6I	CCWGG	1 cut(s)	1224
PspGI	CCWGG	1 cut(s)	1224
PspN4I	GGNNCC	4 cut(s)	655, 792, 1101, 1281
PstI	CTGCAG	2 cut(s)	37, 559
PsuI	RGATCY	4 cut(s)	334, 1099, 1279, 1447
RsaI	GTAC	4 cut(s)	655, 1077, 1094, 1109
RsaNI	GTAC	4 cut(s)	654, 1076, 1093, 1108
RseI	CAYNNNNRTG	3 cut(s)	400, 404, 877
SaqAI	TTAA	2 cut(s)	669, 893
SatI	GCNGC	1 cut(s)	942
Sau3AI	GATC	4 cut(s)	334, 1099, 1279, 1447
ScaI	AGTACT	1 cut(s)	1109
SchI	GAGTC	1 cut(s)	851
ScrFI	CCNGG	1 cut(s)	1226
SexAI	ACCWGGT	1 cut(s)	1224
SfaNI	GCATC	4 cut(s)	380, 1241, 1288, 1415
SfcI	CTRYAG	5 cut(s)	33, 555, 1003, 1147, 1452
SmiMI	CAYNNNNRTG	3 cut(s)	400, 404, 877
SmlI	CTYRAG	1 cut(s)	1284
SmoI	CTYRAG	1 cut(s)	1284
SseBI	AGGCCT	1 cut(s)	1372
SsiI	CCGC	1 cut(s)	665
SspMI	CTAG	9 cut(s)	251, 311, 332, 348, 605, 800, 992, 1293, 1374
StuI	AGGCCT	1 cut(s)	1372
StyD4I	CCNGG	1 cut(s)	1224
StyI	CCWWGG	1 cut(s)	1476
TaaI	ACNGT	9 cut(s)	85, 119, 181, 345, 628, 653, 890, 1007, 1344
TaiI	ACGT	1 cut(s)	1439
TaqI	TCGA	3 cut(s)	165, 261, 748
TatI	WGTACW	1 cut(s)	1107
TfiI	GAWTC	3 cut(s)	866, 897, 1487
Tru1I	TTAA	2 cut(s)	669, 893
Tru9I	TTAA	2 cut(s)	669, 893
TscAI	CASTG	2 cut(s)	312, 1012
TseFI	GTSAC	2 cut(s)	147, 301
TseI	GCWGC	1 cut(s)	941
Tsp45I	GTSAC	2 cut(s)	147, 301
TspGWI	ACGGA	2 cut(s)	800, 833
TspRI	CASTG	2 cut(s)	312, 1012
XapI	RAATTY	4 cut(s)	139, 474, 512, 1314
XbaI	TCTAGA	2 cut(s)	331, 991
XmiI	GTMKAC	2 cut(s)	127, 316
XmnI	GAANNNNTTC	2 cut(s)	476, 1266
XspI	CTAG	9 cut(s)	251, 311, 332, 348, 605, 800, 992, 1293, 1374
ZrmI	AGTACT	1 cut(s)	1109
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.