MD04G1239400.v1.1

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
31757778 .. 31759481
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1239400.v1.1.491

Sequence Viewer

Length: 1482 bp
ATGAACCTATCTTCCTTCTATGATTTCCTCTATGCTTGCCTGTGTATGTCCCTATTTTATCAACCAGCACACGCTCAGCAGGTATACCTCAACAGCACAGAGTACTGCGATGATAGCCCCATATCAAAAGGGTACCTCTGTGATTCCAGTGTCAAGTCCTGCCAGTCCTTCGTCACGTTCAGATCGCAGCCGCCCCATGACACCGCCATCAGCATCGCCTCTCTCCTCGCCTCCGAAGCCTCAGAGATTGCCTCAGTTAACAAGGTTTCAGCAAGTGACAAGATTCCAATTAACAGGTTGGTTGTAGTTCCAGTTTCTTGTACATGTTCGGGCAGTATCTCCCAGCACTTCTCTACTTACACCGTGACAAAAGGCGATACGTATTATAAGACGGCCGTCTACACTTTCCAAGGCCTGGCTACATGTCAGTCTATGATAGGTCAGAACTATTATGAACCTGTAAATATTACGGTGGGAGCAGTGTTAACAGTTCCGATGAGATGCGCTTGCCCGAGCGAAAAGCAAACTGCAGATGGGATTACATCCCTGCTGACATATATAGTAGCCATGAACGACACAATTGCAAGAATAGGAGAGATATTTGGGGTCAACAGTCAAAGTATACTAGAGGCAAATTTGTTGTCACGGGACAGCATTATCGACCCTAATACAACTGTTCTTGTTCCCCTCAAAAGCAAGAAATGCCCTACTTCTGATGGGAATTTCGTTGTAAATGGGAGTATCCTAGAATATGTCAATTGTATTCGCAACGGCAAAAAGTTTCCGGTGAAGTTGGTCACACTGCTAGGTATTGGGATTGGGTTTGCATTCATATGCGTGTTCCTTTTATGCTACTATTTATATCAATGCGTGAAGAGAAGGAGAACCAAAACCCGTAAGGAGAAATTTTTCAAGCAAAATGGGGGCTTCTTGTTGCGAGAAAAATTCTCATCTTACGGAATTAGTAGCAATGCAAAACTATTTACTGCAGAGGAGTTGGAGAGAGCAACAGATAACTACAACGAGAGCCGGTTTCTAGGGGAAGGAGGTTATGGCACAGTTTATAAAGGGATGTTACCTGACGGAACCATAGTAGCGGTTAAAAGGTCAAGGGCGATGGACGAAAATCAGATTGAGCAATTCATCAATGAAGTTGTCATTCTAACTCAAATCAATCATCGAAACATCGTGAAATTGCTTGGTTGTTGTTTGGAGACGGAGGTTCCATTGCTAGTATATGAGTATATTTCTAATGGAACTCTCTCCCATCATATCCTTCAGAAGAAAGACTCCACCGAATCATCACTTTCGTGGGAATGCCGTTTAAGGATCGCTTGTGAAGTTGCCGGAGCAATAGCTTATATGCACTCAGCAGCTTCAATCCCCATCTATCACAGAGACATCAAGTCGTCTAACATACTTCTAGACCACAACTACAGTGCTAAAGTATCCGACTTGGGACTTCCAAATCAGTTCCCTTGA

Protein Analysis

494

Amino Acids

54.67

Weight (kDa)

7.99

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM1_NFP_LYK PF23446 53 - 109 1e-16 NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5 PF23472 115 - 167 1.9e-16 LYK3/4/5 LysM2 domain
LysM3_LYK4_5 PF23473 183 - 230 8.2e-16 LYK4/5 LysM3 domain
Pkinase PF00069 340 - 491 1.1e-29 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 344 - 491 4.6e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020390)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 387, 1065
Acc36I ACCTGC 1 cut(s) 70
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 415
AccI GTMKAC 3 cut(s) 84, 399, 622
AciI CCGC 3 cut(s) 191, 204, 1097
AclWI GGATC 1 cut(s) 1337
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 4 cut(s) 634, 721, 905, 944
AcuI CTGAAG 1 cut(s) 1262
AfaI GTAC 3 cut(s) 104, 134, 322
AfiI CCNNNNNNNGG 1 cut(s) 415
AflIII ACRYGT 2 cut(s) 323, 422
AgsI TTSAA 2 cut(s) 913, 1380
AhdI GACNNNNNGTC 1 cut(s) 1405
AjnI CCWGG 1 cut(s) 414
AleI CACNNNNGTG 1 cut(s) 1309
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 2 cut(s) 1358, 1376
AluI AGCT 2 cut(s) 1358, 1376
Alw26I GTCTC 2 cut(s) 1208, 1392
AlwI GGATC 1 cut(s) 1337
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 2 cut(s) 393, 412
ApeKI GCWGC 2 cut(s) 187, 1373
ApoI RAATTY 4 cut(s) 634, 721, 905, 944
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
Asp700I GAANNNNTTC 1 cut(s) 908
Asp718I GGTACC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 799
AvaI CYCGRG 1 cut(s) 511
BaeI ACNNNNGTAYC 2 cut(s) 124, 157
BanI GGYRCC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 199, 1385
BccI CCATC 6 cut(s) 215, 527, 710, 1111, 1275, 1394
BceAI ACGGC 4 cut(s) 380, 408, 787, 1305
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 1 cut(s) 416
BciVI GTATCC 2 cut(s) 752, 1459
BcoDI GTCTC 2 cut(s) 1208, 1392
BfaI CTAG 6 cut(s) 626, 746, 806, 1037, 1232, 1424
BfmI CTRYAG 3 cut(s) 528, 987, 1435
BfuAI ACCTGC 1 cut(s) 70
BfuI GTATCC 2 cut(s) 752, 1459
BisI GCNGC 3 cut(s) 188, 191, 1374
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 3 cut(s) 189, 192, 1375
BmcAI AGTACT 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 416
BmeRI GACNNNNNGTC 1 cut(s) 1405
BmeT110I CYCGRG 1 cut(s) 511
BmiI GGNNCC 3 cut(s) 134, 1087, 1224
BmrFI CCNGG 1 cut(s) 416
BmsI GCATC 2 cut(s) 222, 491
BoxI GACNNNNGTC 1 cut(s) 395
BplI GAGNNNNNCTC 2 cut(s) 236, 268
Bpu1102I GCTNAGC 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 409
BsaWI WCCGGW 1 cut(s) 784
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse118I RCCGGY 1 cut(s) 1029
Bse1I ACTGG 3 cut(s) 147, 163, 311
Bse3DI GCAATG 2 cut(s) 976, 1226
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 2 cut(s) 542, 1077
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMI GCAATG 2 cut(s) 976, 1226
BseMII CTCAG 4 cut(s) 89, 255, 267, 1383
BseNI ACTGG 3 cut(s) 147, 163, 311
BseRI GAGGAG 2 cut(s) 215, 1007
BseX3I CGGCCG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 199, 1385
BseYI CCCAGC 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 2 cut(s) 395, 414
BshNI GGYRCC 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 3 cut(s) 785, 1030, 1347
BslFI GGGAC 3 cut(s) 34, 662, 1473
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 2 cut(s) 1208, 1392
BsmBI CGTCTC 1 cut(s) 1208
BsmFI GGGAC 3 cut(s) 34, 662, 1473
BsmI GAATGC 2 cut(s) 827, 1322
BsnI GGCC 2 cut(s) 395, 414
BsoBI CYCGRG 1 cut(s) 511
Bsp1407I TGTACA 1 cut(s) 320
Bsp143I GATC 2 cut(s) 182, 1329
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 3 cut(s) 191, 204, 1097
BspANI GGCC 2 cut(s) 395, 414
BspCNI CTCAG 4 cut(s) 88, 254, 266, 1382
BspLI GGNNCC 3 cut(s) 134, 1087, 1224
BspMAI CTGCAG 2 cut(s) 532, 991
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 1 cut(s) 1337
BspT107I GGYRCC 1 cut(s) 132
BsrDI GCAATG 2 cut(s) 976, 1226
BsrFI RCCGGY 1 cut(s) 1029
BsrGI TGTACA 1 cut(s) 320
BsrI ACTGG 3 cut(s) 147, 163, 311
BssAI RCCGGY 1 cut(s) 1029
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 2 cut(s) 182, 1329
BssNAI GTATAC 2 cut(s) 85, 623
BssT1I CCWWGG 1 cut(s) 409
Bst1107I GTATAC 2 cut(s) 85, 623
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 7 cut(s) 364, 472, 490, 614, 676, 1060, 1439
Bst6I CTCTTC 1 cut(s) 869
BstAPI GCANNNNNTGC 1 cut(s) 702
BstAUI TGTACA 1 cut(s) 320
BstBAI YACGTR 1 cut(s) 381
BstC8I GCNNGC 2 cut(s) 37, 508
BstDEI CTNAG 4 cut(s) 75, 241, 253, 1369
BstF5I GGATG 2 cut(s) 542, 1077
BstHHI GCGC 1 cut(s) 506
BstKTI GATC 2 cut(s) 185, 1332
BstMAI GTCTC 2 cut(s) 1208, 1392
BstMBI GATC 2 cut(s) 182, 1329
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 3 cut(s) 114, 236, 702
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 2 cut(s) 327, 426
BstPAI GACNNNNGTC 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 414
BstSFI CTRYAG 3 cut(s) 528, 987, 1435
BstSNI TACGTA 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 199, 1385
BstZ17I GTATAC 2 cut(s) 85, 623
BstZI CGGCCG 1 cut(s) 393
BsuI GTATCC 2 cut(s) 752, 1459
BsuRI GGCC 2 cut(s) 395, 414
BtgZI GCGATG 3 cut(s) 123, 199, 1130
BtsCI GGATG 2 cut(s) 542, 1077
BtsI GCAGTG 2 cut(s) 486, 800
BtsIMutI CAGTG 4 cut(s) 154, 486, 800, 1444
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 37, 508
CfoI GCGC 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 1029
Csp6I GTAC 3 cut(s) 103, 133, 321
CviAII CATG 4 cut(s) 197, 324, 423, 568
CviQI GTAC 3 cut(s) 103, 133, 321
DdeI CTNAG 4 cut(s) 75, 241, 253, 1369
DpnI GATC 2 cut(s) 184, 1331
DpnII GATC 2 cut(s) 182, 1329
DriI GACNNNNNGTC 1 cut(s) 1405
EaeI YGGCCR 1 cut(s) 393
EagI CGGCCG 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 869
Eam1105I GACNNNNNGTC 1 cut(s) 1405
EarI CTCTTC 1 cut(s) 869
EclXI CGGCCG 1 cut(s) 393
Eco105I TACGTA 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 409
Eco147I AGGCCT 1 cut(s) 414
Eco52I CGGCCG 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 1262
Eco88I CYCGRG 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 409
Esp3I CGTCTC 1 cut(s) 1208
FaeI CATG 4 cut(s) 200, 327, 426, 571
FalI AAGNNNNNCTT 2 cut(s) 1318, 1350
FaqI GGGAC 3 cut(s) 34, 662, 1473
FatI CATG 4 cut(s) 196, 323, 422, 567
FauNDI CATATG 1 cut(s) 833
FblI GTMKAC 3 cut(s) 84, 399, 622
Fnu4HI GCNGC 3 cut(s) 188, 191, 1374
FokI GGATG 2 cut(s) 529, 1084
Fsp4HI GCNGC 3 cut(s) 188, 191, 1374
FspBI CTAG 6 cut(s) 626, 746, 806, 1037, 1232, 1424
GlaI GCGC 1 cut(s) 505
GluI GCNGC 3 cut(s) 188, 191, 1374
GsaI CCCAGC 1 cut(s) 346
HaeIII GGCC 2 cut(s) 395, 414
HapII CCGG 3 cut(s) 785, 1030, 1347
HhaI GCGC 1 cut(s) 506
Hin1II CATG 4 cut(s) 200, 327, 426, 571
Hin6I GCGC 1 cut(s) 504
HinP1I GCGC 1 cut(s) 504
HincII GTYRAC 3 cut(s) 259, 486, 610
HindII GTYRAC 3 cut(s) 259, 486, 610
HinfI GANTC 4 cut(s) 143, 283, 1289, 1298
HpaI GTTAAC 2 cut(s) 259, 486
HpaII CCGG 3 cut(s) 785, 1030, 1347
HphI GGTGA 1 cut(s) 799
Hpy166II GTNNAC 6 cut(s) 85, 259, 400, 486, 610, 623
Hpy188I TCNGA 9 cut(s) 182, 235, 244, 444, 495, 715, 1131, 1281, 1453
Hpy188III TCNNGA 2 cut(s) 1189, 1424
Hpy8I GTNNAC 6 cut(s) 85, 259, 400, 486, 610, 623
HpyAV CCTTC 5 cut(s) 25, 178, 873, 1037, 1286
HpyCH4III ACNGT 7 cut(s) 364, 472, 490, 614, 676, 1060, 1439
HpyCH4IV ACGT 2 cut(s) 176, 380
HpyCH4V TGCA 6 cut(s) 530, 584, 827, 974, 989, 1366
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 236, 702
HpyF3I CTNAG 4 cut(s) 75, 241, 253, 1369
HpySE526I ACGT 2 cut(s) 176, 380
Hsp92II CATG 4 cut(s) 200, 327, 426, 571
HspAI GCGC 1 cut(s) 504
KpnI GGTACC 1 cut(s) 136
KspAI GTTAAC 2 cut(s) 259, 486
Kzo9I GATC 2 cut(s) 182, 1329
LmnI GCTCC 2 cut(s) 476, 1349
Lsp1109I GCAGC 2 cut(s) 199, 1385
LweI GCATC 2 cut(s) 222, 491
MaeI CTAG 6 cut(s) 626, 746, 806, 1037, 1232, 1424
MaeII ACGT 2 cut(s) 176, 380
MaeIII GTNAC 6 cut(s) 172, 275, 364, 642, 796, 1074
MalI GATC 2 cut(s) 184, 1331
MboI GATC 2 cut(s) 182, 1329
MboII GAAGA 3 cut(s) 3, 886, 1294
MfeI CAATTG 2 cut(s) 579, 757
MlyI GAGTC 1 cut(s) 1283
MmeI TCCRAC 2 cut(s) 978, 1476
MroXI GAANNNNTTC 1 cut(s) 908
MseI TTAA 5 cut(s) 258, 291, 485, 1101, 1325
MslI CAYNNNNRTG 3 cut(s) 832, 836, 1309
MspI CCGG 3 cut(s) 785, 1030, 1347
MspR9I CCNGG 1 cut(s) 416
MunI CAATTG 2 cut(s) 579, 757
Mva1269I GAATGC 2 cut(s) 827, 1322
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 3 cut(s) 114, 236, 702
NdeI CATATG 1 cut(s) 833
NdeII GATC 2 cut(s) 182, 1329
NlaIII CATG 4 cut(s) 200, 327, 426, 571
NlaIV GGNNCC 3 cut(s) 134, 1087, 1224
NmuCI GTSAC 5 cut(s) 172, 275, 364, 642, 796
NspI RCATGY 2 cut(s) 327, 426
OliI CACNNNNGTG 1 cut(s) 1309
PceI AGGCCT 1 cut(s) 414
PciI ACATGT 2 cut(s) 323, 422
PctI GAATGC 2 cut(s) 827, 1322
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 3 cut(s) 143, 283, 1298
PflMI CCANNNNNTGG 1 cut(s) 415
PkrI GCNGC 3 cut(s) 189, 192, 1375
PleI GAGTC 1 cut(s) 1283
PpsI GAGTC 1 cut(s) 1283
Ppu21I YACGTR 1 cut(s) 381
PscI ACATGT 2 cut(s) 323, 422
PshAI GACNNNNGTC 1 cut(s) 395
PsiI TTATAA 2 cut(s) 387, 1065
Psp6I CCWGG 1 cut(s) 414
PspFI CCCAGC 1 cut(s) 342
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 3 cut(s) 134, 1087, 1224
PstI CTGCAG 2 cut(s) 532, 991
RsaI GTAC 3 cut(s) 104, 134, 322
RsaNI GTAC 3 cut(s) 103, 133, 321
RseI CAYNNNNRTG 3 cut(s) 832, 836, 1309
SaqAI TTAA 5 cut(s) 258, 291, 485, 1101, 1325
SatI GCNGC 3 cut(s) 188, 191, 1374
Sau3AI GATC 2 cut(s) 182, 1329
ScaI AGTACT 1 cut(s) 104
SchI GAGTC 1 cut(s) 1283
ScrFI CCNGG 1 cut(s) 416
SfaNI GCATC 2 cut(s) 222, 491
SfcI CTRYAG 3 cut(s) 528, 987, 1435
SmiMI CAYNNNNRTG 3 cut(s) 832, 836, 1309
SnaBI TACGTA 1 cut(s) 381
SseBI AGGCCT 1 cut(s) 414
SsiI CCGC 3 cut(s) 191, 204, 1097
SspI AATATT 1 cut(s) 466
SspMI CTAG 6 cut(s) 626, 746, 806, 1037, 1232, 1424
StuI AGGCCT 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 7 cut(s) 364, 472, 490, 614, 676, 1060, 1439
TaiI ACGT 2 cut(s) 179, 383
TaqI TCGA 2 cut(s) 660, 1180
TatI WGTACW 2 cut(s) 102, 320
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 3 cut(s) 143, 283, 1298
Tru1I TTAA 5 cut(s) 258, 291, 485, 1101, 1325
Tru9I TTAA 5 cut(s) 258, 291, 485, 1101, 1325
TscAI CASTG 4 cut(s) 154, 486, 807, 1444
TseFI GTSAC 5 cut(s) 172, 275, 364, 642, 796
TseI GCWGC 2 cut(s) 187, 1373
Tsp45I GTSAC 5 cut(s) 172, 275, 364, 642, 796
TspDTI ATGAA 6 cut(s) 17, 468, 584, 820, 1132, 1164
TspGWI ACGGA 3 cut(s) 972, 1098, 1232
TspRI CASTG 4 cut(s) 154, 486, 807, 1444
Van91I CCANNNNNTGG 1 cut(s) 415
XapI RAATTY 4 cut(s) 634, 721, 905, 944
XbaI TCTAGA 1 cut(s) 1423
XceI RCATGY 2 cut(s) 327, 426
XmiI GTMKAC 3 cut(s) 84, 399, 622
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 6 cut(s) 626, 746, 806, 1037, 1232, 1424
ZrmI AGTACT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.