Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0028808

Physical Location & Seq

Genomic Coordinates Reverse (-)

7318208 .. 7330348

Gene Structure 12141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1043100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTGTGTATTGACCCGGTCTGGTGGGTGCTGCGGGCTCCAAACTCGAGAAGGCTCTCGGCGACCAGTTTCCGGAAGGCGAGCGATATTTGGGACTCGAGAATTTCGGCAACACTTGCTATTGTAACAGCGTTTTGCAGACTCTGGTTGGAAAAGTTGCCTGATAGAGATTTTGGCATAGGTGTGTGTAAGAGGACGGAGTACTTCATCCCCGAGGCTTTCCGTTCCAAGTACAGAGGCAGTGTTCCTTTGCTTGCATCAATCTTTTGCAAGTGTTTGACAAAAAAAAAAAACTTTGGAAGTGATAATAACTGCTGTTCTTACAGACAAAAAGGCCCCGCACTCATCTCTTTCCTCCAGATTTCTTCCTGCCTGGCCGTCGTCCTGTTTTACCCCTGCTCACTTGGTGCGACTTCTCCTCACCAAGCAGCCACTCTACTCCAGATCTTTCAAATTGAAGTTCCTCTGCTTCAACCTTGTGCATGTTGGATTTCACATCAACAACATCTCCCTATAACCTTGGAGCTTTGTTCGGATTCAAGCTTTCCGACGGTAATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070129 GO:0070131 GO:0070132 GO:0070134 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

188

Amino Acids

20.98

Weight (kDa)

8.98

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028808)

Species	Orthologous Gene IDs
malus_domestica	MD05G1043100.v1.1
pyrus_communis	pycom05g03560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	2 cut(s)	34, 339
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	203, 233
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	4 cut(s)	452, 458, 473, 540
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	2 cut(s)	526, 543
AluI	AGCT	2 cut(s)	526, 543
AlwNI	CAGNNNCTG	1 cut(s)	144
Ama87I	CYCGRG	3 cut(s)	46, 97, 212
Aor13HI	TCCGGA	1 cut(s)	72
AoxI	GGCC	2 cut(s)	334, 375
ApeKI	GCWGC	2 cut(s)	31, 428
ApoI	RAATTY	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	413
AvaI	CYCGRG	3 cut(s)	46, 97, 212
BanII	GRGCYC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	18, 440
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	17
BglII	AGATCT	1 cut(s)	444
BisI	GCNGC	2 cut(s)	32, 429
BlsI	GCNGC	2 cut(s)	33, 430
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	17, 374
BmeT110I	CYCGRG	3 cut(s)	46, 97, 212
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	39, 337
BmrFI	CCNGG	2 cut(s)	17, 374
BmsI	GCATC	1 cut(s)	266
BpmI	CTGGAG	2 cut(s)	341, 425
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	213, 519
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	213, 519
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	18, 440
BshFI	GGCC	2 cut(s)	336, 377
BsiHKCI	CYCGRG	3 cut(s)	46, 97, 212
BsiSI	CCGG	2 cut(s)	17, 73
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	336, 377
BsoBI	CYCGRG	3 cut(s)	46, 97, 212
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp13I	TCCGGA	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	444
BspACI	CCGC	2 cut(s)	34, 339
BspANI	GGCC	2 cut(s)	336, 377
BspEI	TCCGGA	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	39, 337
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	213, 519
BssMI	GATC	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	553
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	36, 82, 255
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	447
BstMBI	GATC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	486
BstSCI	CCNGG	2 cut(s)	15, 372
BstV1I	GCAGC	2 cut(s)	18, 440
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	336, 377
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	3 cut(s)	36, 82, 255
CaiI	CAGNNNCTG	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	202, 232
CviAII	CATG	1 cut(s)	483
CviJI	RGCY	8 cut(s)	38, 55, 218, 336, 377, 431, 526, 543
CviKI_1	RGCY	8 cut(s)	38, 55, 218, 336, 377, 431, 526, 543
CviQI	GTAC	2 cut(s)	202, 232
DpnI	GATC	1 cut(s)	446
DpnII	GATC	1 cut(s)	444
DraIII	CACNNNGTG	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	40
Eco88I	CYCGRG	3 cut(s)	46, 97, 212
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	1 cut(s)	486
FaiI	YATR	3 cut(s)	179, 484, 515
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	1 cut(s)	482
FauI	CCCGC	2 cut(s)	27, 346
Fnu4HI	GCNGC	2 cut(s)	32, 429
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	2 cut(s)	32, 429
GluI	GCNGC	2 cut(s)	32, 429
GsuI	CTGGAG	2 cut(s)	341, 425
HaeIII	GGCC	2 cut(s)	336, 377
HapII	CCGG	2 cut(s)	17, 73
Hin1II	CATG	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	3 cut(s)	95, 141, 536
HpaII	CCGG	2 cut(s)	17, 73
HphI	GGTGA	1 cut(s)	413
Hpy188I	TCNGA	2 cut(s)	535, 549
Hpy188III	TCNNGA	5 cut(s)	48, 73, 99, 358, 442
Hpy99I	CGWCG	2 cut(s)	383, 553
HpyAV	CCTTC	2 cut(s)	45, 70
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4V	TGCA	4 cut(s)	138, 257, 270, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	486
Kpn2I	TCCGGA	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	444
LmnI	GCTCC	2 cut(s)	43, 523
Lsp1109I	GCAGC	2 cut(s)	18, 440
LweI	GCATC	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	446
MboI	GATC	1 cut(s)	444
MboII	GAAGA	1 cut(s)	357
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	3 cut(s)	102, 453, 555
MlyI	GAGTC	2 cut(s)	89, 135
MmeI	TCCRAC	2 cut(s)	129, 467
MnlI	CCTC	6 cut(s)	186, 208, 230, 365, 429, 474
MroI	TCCGGA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	2 cut(s)	17, 73
MspR9I	CCNGG	2 cut(s)	17, 374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	1 cut(s)	444
NlaIII	CATG	1 cut(s)	486
NlaIV	GGNNCC	2 cut(s)	39, 337
NmeAIII	GCCGAG	1 cut(s)	38
NspI	RCATGY	1 cut(s)	486
PaeR7I	CTCGAG	2 cut(s)	46, 97
PfeI	GAWTC	1 cut(s)	536
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	33, 430
PleI	GAGTC	2 cut(s)	89, 135
PpsI	GAGTC	2 cut(s)	89, 135
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	39, 337
PspPI	GGNCC	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	444
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	2 cut(s)	203, 233
RsaNI	GTAC	2 cut(s)	202, 232
RseI	CAYNNNNRTG	1 cut(s)	182
SatI	GCNGC	2 cut(s)	32, 429
Sau3AI	GATC	1 cut(s)	444
Sau96I	GGNCC	1 cut(s)	335
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	2 cut(s)	89, 135
ScrFI	CCNGG	2 cut(s)	17, 374
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	5 cut(s)	184, 478, 521, 528, 545
SfaNI	GCATC	1 cut(s)	266
Sfr274I	CTCGAG	2 cut(s)	46, 97
SlaI	CTCGAG	2 cut(s)	46, 97
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	46, 97
SmoI	CTYRAG	2 cut(s)	46, 97
Sse9I	AATT	3 cut(s)	102, 453, 555
SsiI	CCGC	2 cut(s)	34, 339
StyD4I	CCNGG	2 cut(s)	15, 372
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	1 cut(s)	553
TaqI	TCGA	2 cut(s)	47, 98
TasI	AATT	3 cut(s)	102, 453, 555
TatI	WGTACW	2 cut(s)	201, 231
TfiI	GAWTC	1 cut(s)	536
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	2 cut(s)	31, 428
TspDTI	ATGAA	1 cut(s)	196
TspGWI	ACGGA	2 cut(s)	212, 212
TspRI	CASTG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	1 cut(s)	486
XhoI	CTCGAG	2 cut(s)	46, 97
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.