pycom05g03560

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0028808
Physical Location & Seq
Reverse (-)
4121526 .. 4127350
5825 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g03560.9

Sequence Viewer

Length: 516 bp
ATGCTCCACTTCCGAACAAACCCTAACAATTCAACACACACACATAGCGACGCGGTGAGCAACTCAGTTGTCAATGGCATGCGAATCAAGGCTCTCGGCGACCAGTTTCCGGAAGGCGAGCGACATTTTGGACTCGAGAATTTCGGCAACACTTGCTATTGTAACAGCGTTTTGCAGCTAGGGTTGGAAAAGTTGCCTGATAGAGATTTTGGCATAGGTGTGTGTAAGCGGACGGAGTACTTCATCCCCGAGGCTTTCCGTTCCAAGTACAGAGGCAGTGTTCCTTTGCTTGCATCAATCTTTTGGAAGTGTTTGACAAAAAAAAAACTTTTGGAAGTGATAATAACTGCTGTTGTTACAGATGATTATTATCTATCAATCTTAAAGTTTGGTCATGAAGCAAGGCTCTTGTTAATTTGGCTAAACCCAAATACCAAATTCCCTCGTTTTTCTCTCAAATTCTGCACATTTTCGCTTTCTCAAATCAACCCAATATCTACCATCGATGGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH

Protein Analysis

172

Amino Acids

19.48

Weight (kDa)

9.15

Isoelectric Point (pI)

17.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028808)

Species Orthologous Gene IDs
malus_domestica MD05G1043100.v1.1
pyrus_communis pycom05g03560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 53
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 2 cut(s) 53, 229
AcsI RAATTY 3 cut(s) 139, 437, 458
AfaI GTAC 2 cut(s) 239, 269
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 1 cut(s) 33
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Ama87I CYCGRG 2 cut(s) 134, 248
Aor13HI TCCGGA 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 3 cut(s) 139, 437, 458
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 2 cut(s) 134, 248
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 500, 509
BfaI CTAG 1 cut(s) 179
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
BmcAI AGTACT 1 cut(s) 239
BmeT110I CYCGRG 2 cut(s) 134, 248
BmsI GCATC 1 cut(s) 302
Bsa29I ATCGAT 1 cut(s) 504
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 243
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 53
BshVI ATCGAT 1 cut(s) 504
BsiHKCI CYCGRG 2 cut(s) 134, 248
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 109
BsoBI CYCGRG 2 cut(s) 134, 248
Bsp13I TCCGGA 1 cut(s) 109
BspACI CCGC 2 cut(s) 53, 229
BspCNI CTCAG 1 cut(s) 77
BspDI ATCGAT 1 cut(s) 504
BspEI TCCGGA 1 cut(s) 109
BspFNI CGCG 1 cut(s) 53
BspHI TCATGA 1 cut(s) 394
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 153
BstC8I GCNNGC 3 cut(s) 80, 119, 291
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 82
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 504
BsuTUI ATCGAT 1 cut(s) 504
BtsCI GGATG 1 cut(s) 243
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 3 cut(s) 80, 119, 291
CciI TCATGA 1 cut(s) 394
ClaI ATCGAT 1 cut(s) 504
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 238, 268
CviAII CATG 2 cut(s) 79, 395
CviJI RGCY 5 cut(s) 92, 178, 254, 406, 421
CviKI_1 RGCY 5 cut(s) 92, 178, 254, 406, 421
CviQI GTAC 2 cut(s) 238, 268
DdeI CTNAG 1 cut(s) 64
Eco88I CYCGRG 2 cut(s) 134, 248
FaeI CATG 2 cut(s) 82, 398
FaiI YATR 4 cut(s) 45, 80, 215, 396
FatI CATG 2 cut(s) 78, 394
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 1 cut(s) 179
GluI GCNGC 1 cut(s) 176
HapII CCGG 1 cut(s) 110
HgaI GACGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 82, 398
HinfI GANTC 2 cut(s) 84, 132
HpaII CCGG 1 cut(s) 110
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 3 cut(s) 110, 136, 395
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 3 cut(s) 175, 293, 465
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 1 cut(s) 64
Hsp92II CATG 2 cut(s) 82, 398
Kpn2I TCCGGA 1 cut(s) 109
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 3 cut(s) 116, 123, 210
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 302
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 2 cut(s) 161, 355
MluCI AATT 5 cut(s) 28, 139, 414, 437, 458
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 3 cut(s) 244, 266, 453
MroI TCCGGA 1 cut(s) 109
MseI TTAA 2 cut(s) 383, 413
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 153
NlaIII CATG 2 cut(s) 82, 398
NmeAIII GCCGAG 1 cut(s) 75
NspI RCATGY 1 cut(s) 82
PaeI GCATGC 1 cut(s) 82
PaeR7I CTCGAG 1 cut(s) 134
PagI TCATGA 1 cut(s) 394
PfeI GAWTC 1 cut(s) 84
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
RsaI GTAC 2 cut(s) 239, 269
RsaNI GTAC 2 cut(s) 238, 268
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 2 cut(s) 383, 413
SatI GCNGC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 239
SchI GAGTC 1 cut(s) 126
SetI ASST 2 cut(s) 180, 220
SfaNI GCATC 1 cut(s) 302
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SphI GCATGC 1 cut(s) 82
Sse9I AATT 5 cut(s) 28, 139, 414, 437, 458
SsiI CCGC 2 cut(s) 53, 229
SspMI CTAG 1 cut(s) 179
TaqI TCGA 2 cut(s) 135, 504
TasI AATT 5 cut(s) 28, 139, 414, 437, 458
TatI WGTACW 2 cut(s) 237, 267
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 2 cut(s) 383, 413
Tru9I TTAA 2 cut(s) 383, 413
TscAI CASTG 1 cut(s) 283
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 232, 411
TspGWI ACGGA 2 cut(s) 248, 248
TspRI CASTG 1 cut(s) 283
XapI RAATTY 3 cut(s) 139, 437, 458
XceI RCATGY 1 cut(s) 82
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 1 cut(s) 179
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.