Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0024463

Physical Location & Seq

Genomic Coordinates Reverse (-)

29012425 .. 29016277

Gene Structure 3853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1161300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGGAAGTAGGTCGGCATTGGCAGGCATGGAGGTCCCAATCATCGGCAGTGATTCATTGAATTGGATTGAGATCCCTGCTCCTGCCGCTGATATTTCTACTACTACTTGTGTCATTCCTCTCACCCACGATATTGCCTCTTCCGTCGGCATTGGAGACCCTAGCAGTCGTATACATCTCATACGGAGAATTCATAACAACCATCCTCATCATCTTGAGTTATTTGAGCTCAGTATTACCAAAGACTTCCCCAAAGTTGGACTTCGAATCACTTTTCCAGATGCCCTCTCTCCCCTTGTTCCTATTTGTATAAATAAGATTGATATGGGTTCTATGAGCCACCCCTACTTGGTTTATGCATTGACCGTCTCGGGGGTCGCTTACCTTTTCAGACTTGGACCCATCTCTACTTATGCATCCCGCTCTGTTTTCCGGGAGAATGAGGTTGTGGTGTTTAATATGAACCCCTCTGTACCAGTAACAAGTGCTGCAGGAACATCATCCGGGTGCCTGGTTGTTGGGCGGGATGATGGATCCCTTGCTGGTTTCCAACTGGGCAGACTTGATCCCACTCCTCCGGGTTTTACGCTGGAGCTGCTGGATGATTTCGGATTTGGTCGTTTGTGGGGTCAAATGTCAAGGAGGATAGCGGCTGTGCAAGACTTGGTGATATGCATCTTTCGTGGAAAGTCACTTGTATTTGTGCTTCATTCTGATGGGATGTTACAAGTATGGGATCTTGCATGTCATAGCAGAATCTTTAGTAAAAACATGAATAGTTGGACACTGGCAGGATTCTTTGGGCCGCTCTTGAAGGGAATCTGCTCAAATACTATCTGTGTATATAGTTTCCGTTGTAATTTGGAGTACGGATCAGTTAGAATGCTGGAATCTTCAGCACAAAATATTCCTTTGGAGGAGGCTGGATGGGTTGACGTCAAACTTACGTCTAAAAAGATATGCATATTGACAACAAAGGGATTAGTGCTTCACAACTTGTTTACGAATGTCATGACGGAAGATGCATGCTCTTACGCTTTGCAGGAGGACTTTGTTGCAGATCAATTGTTTCAAAGTTCTGAACATTCTTCCGATGACCTCCTTTTGATTACACATTCAGTATTCTCATCTTCGAAGGATTGTCAGGTTACTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

386

Amino Acids

42.09

Weight (kDa)

5.82

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	63 - 259	3.1e-17	Nucleoporin Nup120/160, beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024463)

Species	Orthologous Gene IDs
malus_domestica	MD05G1161300.v1.1 MD05G1162900.v1.1
rosa_multiflora	Rmu_ssc0000093.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	939
AccB1I	GGYRCC	1 cut(s)	507
AccBSI	CCGCTC	2 cut(s)	423, 808
AccI	GTMKAC	1 cut(s)	172
AciI	CCGC	5 cut(s)	87, 421, 523, 650, 806
AclWI	GGATC	6 cut(s)	67, 528, 541, 560, 744, 880
AcsI	RAATTY	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	879
AcyI	GRCGYC	1 cut(s)	936
AfaI	GTAC	2 cut(s)	474, 869
AfiI	CCNNNNNNNGG	4 cut(s)	44, 257, 349, 372
AgsI	TTSAA	3 cut(s)	61, 814, 1073
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	2 cut(s)	229, 595
AluI	AGCT	2 cut(s)	229, 595
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	150, 373
AlwI	GGATC	6 cut(s)	67, 528, 541, 560, 744, 880
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	1 cut(s)	803
ApeKI	GCWGC	2 cut(s)	488, 595
ApoI	RAATTY	1 cut(s)	189
AspS9I	GGNCC	3 cut(s)	34, 398, 803
AsuC2I	CCSGG	3 cut(s)	434, 505, 579
AsuHPI	GGTGA	2 cut(s)	115, 679
AsuII	TTCGAA	2 cut(s)	265, 1133
AvaI	CYCGRG	1 cut(s)	370
AvaII	GGWCC	2 cut(s)	34, 398
BamHI	GGATCC	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	507
BanII	GRGCYC	1 cut(s)	231
BarI	GAAGNNNNNNTAC	2 cut(s)	690, 722
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	475, 582
BccI	CCATC	5 cut(s)	210, 410, 524, 710, 921
BciT130I	CCWGG	1 cut(s)	512
BcnI	CCSGG	3 cut(s)	434, 505, 579
BcoDI	GTCTC	2 cut(s)	150, 373
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	5 cut(s)	87, 489, 596, 651, 806
BlsI	GCNGC	5 cut(s)	88, 490, 597, 652, 807
Bme1390I	CCNGG	4 cut(s)	434, 505, 512, 579
Bme18I	GGWCC	2 cut(s)	34, 398
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	3 cut(s)	34, 398, 803
BmiI	GGNNCC	4 cut(s)	36, 400, 509, 535
BmrFI	CCNGG	4 cut(s)	434, 505, 512, 579
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	4 cut(s)	271, 425, 684, 1012
BmuI	ACTGGG	1 cut(s)	563
BpmI	CTGGAG	1 cut(s)	611
Bpu14I	TTCGAA	2 cut(s)	265, 1133
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	3 cut(s)	434, 505, 579
BsaBI	GATNNNNATC	2 cut(s)	71, 674
BsaHI	GRCGYC	1 cut(s)	936
BsaI	GGTCTC	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 257, 349, 372
Bse1I	ACTGG	3 cut(s)	476, 558, 792
Bse8I	GATNNNNATC	2 cut(s)	71, 674
BseBI	CCWGG	1 cut(s)	512
BseGI	GGATG	7 cut(s)	202, 416, 500, 532, 607, 726, 932
BseJI	GATNNNNATC	2 cut(s)	71, 674
BseLI	CCNNNNNNNGG	4 cut(s)	44, 257, 349, 372
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	3 cut(s)	476, 558, 792
BseRI	GAGGAG	2 cut(s)	564, 932
BseXI	GCAGC	2 cut(s)	475, 582
BshFI	GGCC	1 cut(s)	805
BshNI	GGYRCC	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	3 cut(s)	433, 504, 578
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	4 cut(s)	44, 257, 349, 372
BsmAI	GTCTC	2 cut(s)	150, 373
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	888
BsnI	GGCC	1 cut(s)	805
Bso31I	GGTCTC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	370
Bsp119I	TTCGAA	2 cut(s)	265, 1133
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	6 cut(s)	72, 533, 565, 736, 872, 1060
BspACI	CCGC	5 cut(s)	87, 421, 523, 650, 806
BspANI	GGCC	1 cut(s)	805
BspCNI	CTCAG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	1011
BspLI	GGNNCC	4 cut(s)	36, 400, 509, 535
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	6 cut(s)	67, 528, 541, 560, 744, 880
BspT104I	TTCGAA	2 cut(s)	265, 1133
BspT107I	GGYRCC	1 cut(s)	507
BspTNI	GGTCTC	1 cut(s)	150
BsrBI	CCGCTC	2 cut(s)	423, 808
BsrI	ACTGG	3 cut(s)	476, 558, 792
BssMI	GATC	6 cut(s)	72, 533, 565, 736, 872, 1060
BssNAI	GTATAC	1 cut(s)	173
BssNI	GRCGYC	1 cut(s)	936
Bst1107I	GTATAC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	367, 1153
Bst6I	CTCTTC	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	936
BstBI	TTCGAA	2 cut(s)	265, 1133
BstC8I	GCNNGC	2 cut(s)	25, 1027
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	7 cut(s)	202, 416, 500, 532, 607, 726, 932
BstKTI	GATC	6 cut(s)	75, 536, 568, 739, 875, 1063
BstMAI	GTCTC	2 cut(s)	150, 373
BstMBI	GATC	6 cut(s)	72, 533, 565, 736, 872, 1060
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 595
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	2 cut(s)	747, 1029
BstSCI	CCNGG	4 cut(s)	432, 503, 510, 577
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	475, 582
BstX2I	RGATCY	3 cut(s)	72, 533, 736
BstYI	RGATCY	3 cut(s)	72, 533, 736
BstZ17I	GTATAC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	805
BtsCI	GGATG	7 cut(s)	202, 416, 500, 532, 607, 726, 932
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 785
Cac8I	GCNNGC	2 cut(s)	25, 1027
CciI	TCATGA	1 cut(s)	1011
Cfr13I	GGNCC	3 cut(s)	34, 398, 803
Csp6I	GTAC	2 cut(s)	473, 868
CviAII	CATG	5 cut(s)	28, 744, 772, 1012, 1026
CviJI	RGCY	6 cut(s)	229, 339, 595, 653, 805, 923
CviKI_1	RGCY	6 cut(s)	229, 339, 595, 653, 805, 923
CviQI	GTAC	2 cut(s)	473, 868
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	6 cut(s)	74, 535, 567, 738, 874, 1062
DpnII	GATC	6 cut(s)	72, 533, 565, 736, 872, 1060
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	34, 398
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	879
Eco88I	CYCGRG	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	510
EcoT22I	ATGCAT	5 cut(s)	361, 418, 677, 965, 1027
EcoT38I	GRGCYC	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	5 cut(s)	31, 747, 775, 1015, 1029
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	5 cut(s)	27, 743, 771, 1011, 1025
FauI	CCCGC	2 cut(s)	428, 516
FblI	GTMKAC	1 cut(s)	172
Fnu4HI	GCNGC	5 cut(s)	87, 489, 596, 651, 806
FokI	GGATG	7 cut(s)	189, 403, 487, 539, 614, 733, 939
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	5 cut(s)	87, 489, 596, 651, 806
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	5 cut(s)	87, 489, 596, 651, 806
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	1 cut(s)	805
HapII	CCGG	3 cut(s)	433, 504, 578
Hin1I	GRCGYC	1 cut(s)	936
Hin1II	CATG	5 cut(s)	31, 747, 775, 1015, 1029
HincII	GTYRAC	1 cut(s)	934
HindII	GTYRAC	1 cut(s)	934
HinfI	GANTC	6 cut(s)	53, 267, 756, 795, 819, 890
HpaII	CCGG	3 cut(s)	433, 504, 578
HphI	GGTGA	2 cut(s)	115, 679
Hpy166II	GTNNAC	3 cut(s)	173, 934, 1002
Hpy188I	TCNGA	5 cut(s)	392, 611, 715, 1081, 1093
Hpy188III	TCNNGA	4 cut(s)	215, 278, 811, 1012
Hpy8I	GTNNAC	3 cut(s)	173, 934, 1002
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	808, 1129
HpyCH4III	ACNGT	2 cut(s)	367, 1153
HpyCH4IV	ACGT	2 cut(s)	936, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 595
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	2 cut(s)	936, 947
Hsp92I	GRCGYC	1 cut(s)	936
Hsp92II	CATG	5 cut(s)	31, 747, 775, 1015, 1029
Kzo9I	GATC	6 cut(s)	72, 533, 565, 736, 872, 1060
LmnI	GCTCC	2 cut(s)	85, 592
Lsp1109I	GCAGC	2 cut(s)	475, 582
LweI	GCATC	4 cut(s)	271, 425, 684, 1012
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	2 cut(s)	936, 947
MaeIII	GTNAC	4 cut(s)	478, 690, 723, 1147
MalI	GATC	6 cut(s)	74, 535, 567, 738, 874, 1062
MbiI	CCGCTC	2 cut(s)	423, 808
MboI	GATC	6 cut(s)	72, 533, 565, 736, 872, 1060
MboII	GAAGA	5 cut(s)	132, 885, 1031, 1080, 1122
MfeI	CAATTG	1 cut(s)	1064
MflI	RGATCY	3 cut(s)	72, 533, 736
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	61, 189, 859, 1064
MmeI	TCCRAC	3 cut(s)	238, 574, 761
Mph1103I	ATGCAT	5 cut(s)	361, 418, 677, 965, 1027
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	2 cut(s)	505, 714
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	3 cut(s)	433, 504, 578
MspR9I	CCNGG	4 cut(s)	434, 505, 512, 579
MunI	CAATTG	1 cut(s)	1064
Mva1269I	GAATGC	1 cut(s)	888
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	2 cut(s)	86, 595
NciI	CCSGG	3 cut(s)	434, 505, 579
NdeII	GATC	6 cut(s)	72, 533, 565, 736, 872, 1060
NlaIII	CATG	5 cut(s)	31, 747, 775, 1015, 1029
NlaIV	GGNNCC	4 cut(s)	36, 400, 509, 535
NmuCI	GTSAC	1 cut(s)	690
NsiI	ATGCAT	5 cut(s)	361, 418, 677, 965, 1027
NspI	RCATGY	2 cut(s)	747, 1029
NspV	TTCGAA	2 cut(s)	265, 1133
PaeI	GCATGC	1 cut(s)	1029
PagI	TCATGA	1 cut(s)	1011
PctI	GAATGC	1 cut(s)	888
PfeI	GAWTC	6 cut(s)	53, 267, 756, 795, 819, 890
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	5 cut(s)	88, 490, 597, 652, 807
PpuMI	RGGWCCY	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	4 cut(s)	36, 400, 509, 535
PspPI	GGNCC	3 cut(s)	34, 398, 803
PspPPI	RGGWCCY	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	3 cut(s)	72, 533, 736
RsaI	GTAC	2 cut(s)	474, 869
RsaNI	GTAC	2 cut(s)	473, 868
RseI	CAYNNNNRTG	2 cut(s)	505, 714
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	5 cut(s)	87, 489, 596, 651, 806
Sau3AI	GATC	6 cut(s)	72, 533, 565, 736, 872, 1060
Sau96I	GGNCC	3 cut(s)	34, 398, 803
ScrFI	CCNGG	4 cut(s)	434, 505, 512, 579
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	4 cut(s)	271, 425, 684, 1012
SfcI	CTRYAG	1 cut(s)	489
SfuI	TTCGAA	2 cut(s)	265, 1133
SinI	GGWCC	2 cut(s)	34, 398
SmiMI	CAYNNNNRTG	2 cut(s)	505, 714
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	1029
Sse9I	AATT	4 cut(s)	61, 189, 859, 1064
SsiI	CCGC	5 cut(s)	87, 421, 523, 650, 806
SspI	AATATT	1 cut(s)	907
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	4 cut(s)	432, 503, 510, 577
TaaI	ACNGT	2 cut(s)	367, 1153
TaiI	ACGT	2 cut(s)	939, 950
TaqI	TCGA	2 cut(s)	265, 1133
TasI	AATT	4 cut(s)	61, 189, 859, 1064
TauI	GCSGC	3 cut(s)	89, 653, 808
TfiI	GAWTC	6 cut(s)	53, 267, 756, 795, 819, 890
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	2 cut(s)	55, 792
TseFI	GTSAC	1 cut(s)	690
TseI	GCWGC	2 cut(s)	488, 595
Tsp45I	GTSAC	1 cut(s)	690
TspDTI	ATGAA	5 cut(s)	45, 182, 476, 698, 788
TspGWI	ACGGA	5 cut(s)	133, 199, 842, 885, 1031
TspRI	CASTG	2 cut(s)	55, 792
VpaK11BI	GGWCC	2 cut(s)	34, 398
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	2 cut(s)	747, 1029
XmiI	GTMKAC	1 cut(s)	172
XspI	CTAG	1 cut(s)	162
ZraI	GACGTC	1 cut(s)	937
Zsp2I	ATGCAT	5 cut(s)	361, 418, 677, 965, 1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.