Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0024463

Physical Location & Seq

Genomic Coordinates Forward (+)

29192744 .. 29194820

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1162900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCATCCCCGCTCTGTTTTCCGGGAGGATGAGGTTGTGATGCTTAATATGAACCCCTCTGTACCAGTAACAAGTGCTGCAGGAACATCATCTGGGTACCTGGTAATTGGGCGGGATGATGGATCCTTGCTTGTTTCCAACTGGGCAAACTTGATCCCACTGCTCCGGGTTTTGCACTGGAGGTGCAGGATGATTTGGGATTTCGCCATTTGTGGGGTTTCATGTCAAGGTGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

80

Amino Acids

8.72

Weight (kDa)

6.69

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0024463)

Species	Orthologous Gene IDs
malus_domestica	MD05G1161300.v1.1 MD05G1162900.v1.1
rosa_multiflora	Rmu_ssc0000093.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	96
AccBSI	CCGCTC	1 cut(s)	12
AciI	CCGC	2 cut(s)	10, 112
AclWI	GGATC	3 cut(s)	117, 130, 148
AfaI	GTAC	2 cut(s)	63, 98
AfiI	CCNNNNNNNGG	1 cut(s)	213
AjnI	CCWGG	1 cut(s)	99
AlwI	GGATC	3 cut(s)	117, 130, 148
ApeKI	GCWGC	1 cut(s)	77
Asp718I	GGTACC	1 cut(s)	96
AsuC2I	CCSGG	2 cut(s)	23, 167
BamHI	GGATCC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	2 cut(s)	23, 167
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	3 cut(s)	23, 101, 167
BmiI	GGNNCC	2 cut(s)	98, 124
BmrFI	CCNGG	3 cut(s)	23, 101, 167
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	13, 30
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	199
BpuMI	CCSGG	2 cut(s)	23, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse1I	ACTGG	3 cut(s)	65, 146, 182
BseBI	CCWGG	1 cut(s)	101
BseGI	GGATG	4 cut(s)	4, 34, 121, 195
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseNI	ACTGG	3 cut(s)	65, 146, 182
BseXI	GCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	22, 166
BslI	CCNNNNNNNGG	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	122, 153
BspACI	CCGC	2 cut(s)	10, 112
BspLI	GGNNCC	2 cut(s)	98, 124
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	3 cut(s)	117, 130, 148
BspT107I	GGYRCC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	65, 146, 182
BssMI	GATC	2 cut(s)	122, 153
Bst2UI	CCWGG	1 cut(s)	101
BstF5I	GGATG	4 cut(s)	4, 34, 121, 195
BstKTI	GATC	2 cut(s)	125, 156
BstMBI	GATC	2 cut(s)	122, 153
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	3 cut(s)	21, 99, 165
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BtsCI	GGATG	4 cut(s)	4, 34, 121, 195
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	158, 175
CsiI	ACCWGGT	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	62, 97
CviAII	CATG	1 cut(s)	222
CviQI	GTAC	2 cut(s)	62, 97
DpnI	GATC	2 cut(s)	124, 155
DpnII	GATC	2 cut(s)	122, 153
EcoRII	CCWGG	1 cut(s)	99
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	225
FaiI	YATR	2 cut(s)	50, 223
FatI	CATG	1 cut(s)	221
FauI	CCCGC	2 cut(s)	17, 105
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	3 cut(s)	41, 128, 202
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	199
HapII	CCGG	2 cut(s)	22, 166
Hin1II	CATG	1 cut(s)	225
HpaII	CCGG	2 cut(s)	22, 166
HpyCH4V	TGCA	4 cut(s)	4, 80, 175, 186
Hsp92II	CATG	1 cut(s)	225
KpnI	GGTACC	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	122, 153
LmnI	GCTCC	1 cut(s)	168
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	13, 30
MabI	ACCWGGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	124, 155
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	2 cut(s)	122, 153
MflI	RGATCY	1 cut(s)	122
MluCI	AATT	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	4 cut(s)	19, 25, 67, 174
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	45, 238
MspI	CCGG	2 cut(s)	22, 166
MspR9I	CCNGG	3 cut(s)	23, 101, 167
MvaI	CCWGG	1 cut(s)	101
NciI	CCSGG	2 cut(s)	23, 167
NdeII	GATC	2 cut(s)	122, 153
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	2 cut(s)	98, 124
NsiI	ATGCAT	1 cut(s)	6
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	98, 124
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	2 cut(s)	63, 98
RsaNI	GTAC	2 cut(s)	62, 97
SaqAI	TTAA	2 cut(s)	45, 238
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	2 cut(s)	122, 153
ScrFI	CCNGG	3 cut(s)	23, 101, 167
SetI	ASST	4 cut(s)	36, 102, 185, 232
SexAI	ACCWGGT	1 cut(s)	99
SfaNI	GCATC	2 cut(s)	13, 30
SfcI	CTRYAG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	2 cut(s)	10, 112
StyD4I	CCNGG	3 cut(s)	21, 99, 165
TasI	AATT	1 cut(s)	105
Tru1I	TTAA	2 cut(s)	45, 238
Tru9I	TTAA	2 cut(s)	45, 238
TscAI	CASTG	2 cut(s)	165, 182
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	65, 210
TspRI	CASTG	2 cut(s)	165, 182
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.