Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0024461

Physical Location & Seq

Genomic Coordinates Forward (+)

31986066 .. 31990711

Gene Structure 4646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1191300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAGTTCCTCGCAAACCTTCAGATCCAGGACACCCAGAAGCCGGGAAAAGAAAGCCCTAAACCCAAATCCCTCGAAAGTCCCAGGCAACGAGACACTGAGCACCCAGACCCCTCAGAAGTCCGAAGCACTCACCCGCCGTGCCCGAAACGCCAACTTCGTGCTCTCCATAGGAGACATCAGAAAGGCCGCCGCCAAGACCGTCGGCGAATTGACCCAGAAGCGACGGACCGACCAGATCGATCCATGGGGAGAGGAAACCTTGAAGAAGACTTGTGTCAGTTTCCCAGAGAAGCTACCCGAGATGAGGTTTACATATGGTCACTTGGCTCAGCTGAAGTTTGTTATGCCTGAGGTGATTGAAATAAAGAAAGTGCTTATTAAGGATGAGAGAACCAGTTGTCTGAAGCCGGATCTTCATGTCACCATCAATGCTGATGCATGGAGAGCGATGGAAAGTCAAAATCGGAAGCCATTTGGTCCTACGAAGCAAGATATGCGATCAGATACGGACAACCTTCCCTTGTCATCATCTCAGGGTGATGAAATTTCAGATACGGTCAAGCTTCCCTTGTCATCATCTCAGGCATCTTTCCTGTTACTGTATATGGAGCTTTCCTACCCCCGGACATATATTCTATCGACTCCATGCTTTGTTGCATGTATACGGTGCCTTTTTGGTGCTCCCTGCATGCTGGTCATGTGGCCATCGTTTGATGTAATACTAGCAGATCAGGTTTCTGTTGTCATCCCACTGCTGGAGCTTAAGAAGGCAACAAAGAATTTTGGGTCATTGCCGGAACAAATTGGTTACTTTGACATTTTGAGTTTTTATTATGGATGCTCACACTTTCGAGCTGTATACCAGCTCATTGAACAAGATGACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

297

Amino Acids

33.52

Weight (kDa)

8.87

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024461)

Species	Orthologous Gene IDs
malus_domestica	MD05G1191300.v1.1
pyrus_communis	pycom05g17630 pycom05g17710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	669
AccI	GTMKAC	2 cut(s)	664, 861
AciI	CCGC	3 cut(s)	136, 189, 192
AclWI	GGATC	3 cut(s)	18, 236, 420
AcoI	YGGCCR	1 cut(s)	704
AcsI	RAATTY	2 cut(s)	546, 781
AcuI	CTGAAG	3 cut(s)	4, 356, 425
AfiI	CCNNNNNNNGG	4 cut(s)	42, 306, 624, 757
AflII	CTTAAG	1 cut(s)	764
AgsI	TTSAA	3 cut(s)	265, 362, 875
AjnI	CCWGG	2 cut(s)	26, 82
AluBI	AGCT	7 cut(s)	295, 334, 565, 613, 763, 857, 868
AluI	AGCT	7 cut(s)	295, 334, 565, 613, 763, 857, 868
Alw21I	GWGCWC	3 cut(s)	104, 165, 685
Alw26I	GTCTC	2 cut(s)	86, 168
AlwI	GGATC	3 cut(s)	18, 236, 420
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	2 cut(s)	186, 704
ApoI	RAATTY	2 cut(s)	546, 781
AspS9I	GGNCC	2 cut(s)	228, 479
AsuC2I	CCSGG	2 cut(s)	44, 625
AsuHPI	GGTGA	4 cut(s)	124, 367, 415, 551
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	228, 479
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	706
BanI	GGYRCC	1 cut(s)	669
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	3 cut(s)	104, 165, 685
BccI	CCATC	3 cut(s)	434, 445, 715
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	2 cut(s)	28, 84
BcnI	CCSGG	2 cut(s)	44, 625
BcoDI	GTCTC	2 cut(s)	86, 168
BfaI	CTAG	2 cut(s)	725, 889
BfrI	CTTAAG	1 cut(s)	764
BisI	GCNGC	2 cut(s)	189, 192
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	2 cut(s)	190, 193
Bme1390I	CCNGG	4 cut(s)	28, 44, 84, 625
Bme18I	GGWCC	2 cut(s)	228, 479
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	228, 479
BmiI	GGNNCC	1 cut(s)	671
BmrFI	CCNGG	4 cut(s)	28, 44, 84, 625
BmsI	GCATC	3 cut(s)	427, 596, 830
BoxI	GACNNNNGTC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	779
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuMI	CCSGG	2 cut(s)	44, 625
Bsa29I	ATCGAT	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	82, 245, 623
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 306, 624, 757
Bse1I	ACTGG	1 cut(s)	396
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	791
BseBI	CCWGG	2 cut(s)	28, 84
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	3 cut(s)	82, 245, 623
BseGI	GGATG	3 cut(s)	391, 747, 845
BseLI	CCNNNNNNNGG	4 cut(s)	42, 306, 624, 757
BseMI	GCAATG	1 cut(s)	791
BseMII	CTCAG	6 cut(s)	89, 128, 342, 344, 548, 596
BseNI	ACTGG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	145
BshFI	GGCC	2 cut(s)	188, 706
BshNI	GGYRCC	1 cut(s)	669
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	3 cut(s)	104, 165, 685
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	4 cut(s)	43, 410, 625, 797
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	42, 306, 624, 757
BsmAI	GTCTC	2 cut(s)	86, 168
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	188, 706
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	4 cut(s)	104, 145, 165, 685
Bsp143I	GATC	6 cut(s)	23, 237, 241, 412, 500, 730
Bsp1720I	GCTNAGC	1 cut(s)	330
Bsp19I	CCATGG	1 cut(s)	245
BspACI	CCGC	3 cut(s)	136, 189, 192
BspANI	GGCC	2 cut(s)	188, 706
BspCNI	CTCAG	6 cut(s)	90, 127, 343, 343, 547, 595
BspDI	ATCGAT	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	671
BspPI	GGATC	3 cut(s)	18, 236, 420
BspT107I	GGYRCC	1 cut(s)	669
BspTI	CTTAAG	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	791
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	3 cut(s)	82, 245, 623
BssMI	GATC	6 cut(s)	23, 237, 241, 412, 500, 730
BssNAI	GTATAC	2 cut(s)	665, 862
BssT1I	CCWWGG	1 cut(s)	245
Bst1107I	GTATAC	2 cut(s)	665, 862
Bst2UI	CCWGG	2 cut(s)	28, 84
Bst4CI	ACNGT	4 cut(s)	202, 559, 603, 669
BstAFI	CTTAAG	1 cut(s)	764
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	692
BstDEI	CTNAG	6 cut(s)	98, 114, 330, 351, 534, 582
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	391, 747, 845
BstKTI	GATC	6 cut(s)	26, 240, 244, 415, 503, 733
BstMAI	GTCTC	2 cut(s)	86, 168
BstMBI	GATC	6 cut(s)	23, 237, 241, 412, 500, 730
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 446, 496
BstNI	CCWGG	2 cut(s)	28, 84
BstNSI	RCATGY	2 cut(s)	663, 694
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	4 cut(s)	26, 42, 82, 623
BstSLI	GKGCMC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	2 cut(s)	23, 412
BstYI	RGATCY	2 cut(s)	23, 412
BstZ17I	GTATAC	2 cut(s)	665, 862
Bsu15I	ATCGAT	1 cut(s)	240
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	188, 706
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	245
BtgZI	GCGATG	1 cut(s)	464
BtsCI	GGATG	3 cut(s)	391, 747, 845
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	2 cut(s)	95, 752
Cac8I	GCNNGC	1 cut(s)	692
Cfr13I	GGNCC	2 cut(s)	228, 479
ClaI	ATCGAT	1 cut(s)	240
CpoI	CGGWCCG	1 cut(s)	228
CspI	CGGWCCG	1 cut(s)	228
CviAII	CATG	7 cut(s)	246, 419, 441, 648, 660, 691, 700
DdeI	CTNAG	6 cut(s)	98, 114, 330, 351, 534, 582
DpnI	GATC	6 cut(s)	25, 239, 243, 414, 502, 732
DpnII	GATC	6 cut(s)	23, 237, 241, 412, 500, 730
EaeI	YGGCCR	1 cut(s)	704
Eco130I	CCWWGG	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	228, 479
Eco57I	CTGAAG	3 cut(s)	4, 356, 425
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	26, 82
EcoT14I	CCWWGG	1 cut(s)	245
EcoT22I	ATGCAT	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	7 cut(s)	249, 422, 444, 651, 663, 694, 703
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	7 cut(s)	245, 418, 440, 647, 659, 690, 699
FauI	CCCGC	1 cut(s)	143
FauNDI	CATATG	1 cut(s)	316
FblI	GTMKAC	2 cut(s)	664, 861
Fnu4HI	GCNGC	2 cut(s)	189, 192
FokI	GGATG	3 cut(s)	398, 734, 852
Fsp4HI	GCNGC	2 cut(s)	189, 192
FspBI	CTAG	2 cut(s)	725, 889
GluI	GCNGC	2 cut(s)	189, 192
GsuI	CTGGAG	1 cut(s)	779
HaeIII	GGCC	2 cut(s)	188, 706
HapII	CCGG	4 cut(s)	43, 410, 625, 797
Hin1II	CATG	7 cut(s)	249, 422, 444, 651, 663, 694, 703
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	1 cut(s)	643
HpaII	CCGG	4 cut(s)	43, 410, 625, 797
HphI	GGTGA	4 cut(s)	124, 367, 415, 551
Hpy166II	GTNNAC	3 cut(s)	312, 665, 862
Hpy188I	TCNGA	8 cut(s)	23, 117, 124, 182, 405, 468, 505, 553
Hpy8I	GTNNAC	3 cut(s)	312, 665, 862
Hpy99I	CGWCG	2 cut(s)	206, 228
HpyAV	CCTTC	3 cut(s)	28, 527, 763
HpyCH4III	ACNGT	4 cut(s)	202, 559, 603, 669
HpyCH4V	TGCA	3 cut(s)	440, 659, 690
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 446, 496
HpyF3I	CTNAG	6 cut(s)	98, 114, 330, 351, 534, 582
Hsp92II	CATG	7 cut(s)	249, 422, 444, 651, 663, 694, 703
Kzo9I	GATC	6 cut(s)	23, 237, 241, 412, 500, 730
LmnI	GCTCC	3 cut(s)	610, 688, 760
LweI	GCATC	3 cut(s)	427, 596, 830
MaeI	CTAG	2 cut(s)	725, 889
MaeIII	GTNAC	4 cut(s)	320, 421, 597, 809
MalI	GATC	6 cut(s)	25, 239, 243, 414, 502, 732
MboI	GATC	6 cut(s)	23, 237, 241, 412, 500, 730
MboII	GAAGA	3 cut(s)	277, 280, 407
MflI	RGATCY	2 cut(s)	23, 412
MhlI	GDGCHC	4 cut(s)	104, 145, 165, 685
MlsI	TGGCCA	1 cut(s)	706
MluCI	AATT	4 cut(s)	209, 546, 781, 804
MluNI	TGGCCA	1 cut(s)	706
MlyI	GAGTC	1 cut(s)	637
MnlI	CCTC	6 cut(s)	19, 82, 123, 247, 300, 346
Mox20I	TGGCCA	1 cut(s)	706
Mph1103I	ATGCAT	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	706
MseI	TTAA	2 cut(s)	381, 765
Msp20I	TGGCCA	1 cut(s)	706
MspA1I	CMGCKG	1 cut(s)	334
MspCI	CTTAAG	1 cut(s)	764
MspI	CCGG	4 cut(s)	43, 410, 625, 797
MspR9I	CCNGG	4 cut(s)	28, 44, 84, 625
MvaI	CCWGG	2 cut(s)	28, 84
MwoI	GCNNNNNNNGC	3 cut(s)	149, 446, 496
NciI	CCSGG	2 cut(s)	44, 625
NcoI	CCATGG	1 cut(s)	245
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	6 cut(s)	23, 237, 241, 412, 500, 730
NlaIII	CATG	7 cut(s)	249, 422, 444, 651, 663, 694, 703
NlaIV	GGNNCC	1 cut(s)	671
NmuCI	GTSAC	2 cut(s)	320, 421
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	2 cut(s)	663, 694
PaeI	GCATGC	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfoI	TCCNGGA	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	190, 193
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
PshAI	GACNNNNGTC	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	26, 82
PspGI	CCWGG	2 cut(s)	26, 82
PspN4I	GGNNCC	1 cut(s)	671
PspPI	GGNCC	2 cut(s)	228, 479
PsuI	RGATCY	2 cut(s)	23, 412
PvuII	CAGCTG	1 cut(s)	334
Rsr2I	CGGWCCG	1 cut(s)	228
RsrII	CGGWCCG	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	381, 765
SatI	GCNGC	2 cut(s)	189, 192
Sau3AI	GATC	6 cut(s)	23, 237, 241, 412, 500, 730
Sau96I	GGNCC	2 cut(s)	228, 479
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	4 cut(s)	28, 44, 84, 625
SduI	GDGCHC	4 cut(s)	104, 145, 165, 685
SfaNI	GCATC	3 cut(s)	427, 596, 830
SinI	GGWCC	2 cut(s)	228, 479
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SphI	GCATGC	1 cut(s)	694
Sse9I	AATT	4 cut(s)	209, 546, 781, 804
SsiI	CCGC	3 cut(s)	136, 189, 192
SspMI	CTAG	2 cut(s)	725, 889
StyD4I	CCNGG	4 cut(s)	26, 42, 82, 623
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	4 cut(s)	202, 559, 603, 669
TaqI	TCGA	4 cut(s)	74, 240, 641, 853
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	4 cut(s)	209, 546, 781, 804
TauI	GCSGC	2 cut(s)	191, 194
Tru1I	TTAA	2 cut(s)	381, 765
Tru9I	TTAA	2 cut(s)	381, 765
TscAI	CASTG	2 cut(s)	102, 759
TseFI	GTSAC	2 cut(s)	320, 421
Tsp45I	GTSAC	2 cut(s)	320, 421
TspDTI	ATGAA	2 cut(s)	407, 558
TspGWI	ACGGA	2 cut(s)	241, 524
TspRI	CASTG	2 cut(s)	102, 759
Vha464I	CTTAAG	1 cut(s)	764
VpaK11BI	GGWCC	2 cut(s)	228, 479
XapI	RAATTY	2 cut(s)	546, 781
XceI	RCATGY	2 cut(s)	663, 694
XmiI	GTMKAC	2 cut(s)	664, 861
XspI	CTAG	2 cut(s)	725, 889
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.