Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0024461

Physical Location & Seq

Genomic Coordinates Forward (+)

20839940 .. 20840587

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g17710.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAGTTCCTCGCAAACCCTCAGATCCAGGACACCCAGAAGCCGCGAAAAGAAAACCCTAAACCCAAATCCCTCGAAAGTCTCAGGCAACGAGGCACTGAGCACCCAGATCCCTCAGAAGTCCGAAGCACTCATCCGCCGTGCCCAAAACGCCAACTTCGCGCTCTCCATAGGAGACATCAGAAGGGCCGCCGCCAAGAGCAAGGAAAAGTTGGTTGTGCTACTGATCCTGGAAGTTTCAATAACAGCGTCACTGGCCAGCAGGCGGTACTCGAAACAGTTGCAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

97

Amino Acids

10.62

Weight (kDa)

11.24

Isoelectric Point (pI)

63.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024461)

Species	Orthologous Gene IDs
malus_domestica	MD05G1191300.v1.1
pyrus_communis	pycom05g17630 pycom05g17710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	45, 161
AciI	CCGC	5 cut(s)	43, 136, 189, 192, 265
AclWI	GGATC	3 cut(s)	18, 103, 220
AcoI	YGGCCR	1 cut(s)	255
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	26, 228
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	85, 168
AlwI	GGATC	3 cut(s)	18, 103, 220
AoxI	GGCC	2 cut(s)	186, 255
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	123
BcgI	CGANNNNNNTGC	1 cut(s)	262
BciT130I	CCWGG	2 cut(s)	28, 230
BcoDI	GTCTC	2 cut(s)	85, 168
BisI	GCNGC	3 cut(s)	43, 189, 192
BlsI	GCNGC	3 cut(s)	44, 190, 193
Bme1390I	CCNGG	2 cut(s)	28, 230
BmgT120I	GGNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	28, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse1I	ACTGG	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	28, 230
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	4 cut(s)	34, 89, 96, 128
BseNI	ACTGG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	145
Bsh1236I	CGCG	2 cut(s)	45, 161
BshFI	GGCC	2 cut(s)	188, 257
BsiHKAI	GWGCWC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	2 cut(s)	85, 168
BsnI	GGCC	2 cut(s)	188, 257
Bsp1286I	GDGCHC	2 cut(s)	104, 145
Bsp143I	GATC	3 cut(s)	23, 108, 225
BspACI	CCGC	5 cut(s)	43, 136, 189, 192, 265
BspANI	GGCC	2 cut(s)	188, 257
BspCNI	CTCAG	4 cut(s)	33, 90, 95, 127
BspFNI	CGCG	2 cut(s)	45, 161
BspPI	GGATC	3 cut(s)	18, 103, 220
BsrI	ACTGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	23, 108, 225
Bst2UI	CCWGG	2 cut(s)	28, 230
Bst4CI	ACNGT	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	259, 263
BstDEI	CTNAG	4 cut(s)	20, 82, 98, 114
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	2 cut(s)	45, 161
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	3 cut(s)	26, 111, 228
BstMAI	GTCTC	2 cut(s)	85, 168
BstMBI	GATC	3 cut(s)	23, 108, 225
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 158, 254
BstNI	CCWGG	2 cut(s)	28, 230
BstSCI	CCNGG	2 cut(s)	26, 228
BstSLI	GKGCMC	1 cut(s)	145
BstUI	CGCG	2 cut(s)	45, 161
BstX2I	RGATCY	2 cut(s)	23, 108
BstYI	RGATCY	2 cut(s)	23, 108
BsuRI	GGCC	2 cut(s)	188, 257
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	95, 251
Cac8I	GCNNGC	2 cut(s)	259, 263
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	186
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	268
CviJI	RGCY	3 cut(s)	42, 188, 257
CviKI_1	RGCY	3 cut(s)	42, 188, 257
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	4 cut(s)	20, 82, 98, 114
DpnI	GATC	3 cut(s)	25, 110, 227
DpnII	GATC	3 cut(s)	23, 108, 225
EaeI	YGGCCR	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	26, 228
FaiI	YATR	1 cut(s)	170
Fnu4HI	GCNGC	3 cut(s)	43, 189, 192
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	43, 189, 192
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	3 cut(s)	43, 189, 192
HaeIII	GGCC	2 cut(s)	188, 257
HgaI	GACGC	1 cut(s)	237
HhaI	GCGC	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
Hpy188I	TCNGA	4 cut(s)	23, 117, 124, 182
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 158, 254
HpyF3I	CTNAG	4 cut(s)	20, 82, 98, 114
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	23, 108, 225
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	3 cut(s)	25, 110, 227
MboI	GATC	3 cut(s)	23, 108, 225
MflI	RGATCY	2 cut(s)	23, 108
MhlI	GDGCHC	2 cut(s)	104, 145
MlsI	TGGCCA	1 cut(s)	257
MluNI	TGGCCA	1 cut(s)	257
MnlI	CCTC	5 cut(s)	19, 29, 82, 85, 123
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	28, 230
MvaI	CCWGG	2 cut(s)	28, 230
MvnI	CGCG	2 cut(s)	45, 161
MwoI	GCNNNNNNNGC	3 cut(s)	149, 158, 254
NdeII	GATC	3 cut(s)	23, 108, 225
NmuCI	GTSAC	1 cut(s)	249
PfoI	TCCNGGA	2 cut(s)	26, 228
PkrI	GCNGC	3 cut(s)	44, 190, 193
Psp6I	CCWGG	2 cut(s)	26, 228
PspGI	CCWGG	2 cut(s)	26, 228
PspPI	GGNCC	1 cut(s)	186
PsuI	RGATCY	2 cut(s)	23, 108
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SatI	GCNGC	3 cut(s)	43, 189, 192
Sau3AI	GATC	3 cut(s)	23, 108, 225
Sau96I	GGNCC	1 cut(s)	186
ScrFI	CCNGG	2 cut(s)	28, 230
SduI	GDGCHC	2 cut(s)	104, 145
SsiI	CCGC	5 cut(s)	43, 136, 189, 192, 265
StyD4I	CCNGG	2 cut(s)	26, 228
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	74, 272
TauI	GCSGC	3 cut(s)	45, 191, 194
TscAI	CASTG	2 cut(s)	102, 258
TseFI	GTSAC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	249
TspRI	CASTG	2 cut(s)	102, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.