MD05G1213200.v1.1

Ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0021201
Physical Location & Seq
Reverse (-)
34442705 .. 34451469
8765 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1213200.v1.1.491

Sequence Viewer

Length: 252 bp
ATGCTCAAGAATGTGAAAGCTCTATTGGAGGTGGAGGTTGAGAATGTGAAAGCTATGTTGGAGGTGGAGACACGGGTACTACTTCAGCAGCAGAAGTTGCTATGTGAGGGTAGGGAGATGAGGAATTCTGAGATGCTGAGTGCTCTTGGTGTCAAAGATGAAGATTGGATAATGATCGTATCTAATGTCGCCTCGAGGTGCGTTGATTGTGGGAGTTTTGGGAAGAGTTCCCAAGCTCATTCTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2

Protein Analysis

84

Amino Acids

9.24

Weight (kDa)

5.33

Isoelectric Point (pI)

21.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 12 - 60 6.7e-07 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021201)

Species Orthologous Gene IDs
malus_domestica MD05G1213200.v1.1 MD05G1213500.v1.1
prunus_persica Prupe.6G089200_v2.0.a1 Prupe.6G089200_v2.0.a1 Prupe.6G089200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 193
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 78
AjuI GAANNNNNNNTTGG 4 cut(s) 8, 40, 41, 73
AluBI AGCT 3 cut(s) 20, 53, 236
AluI AGCT 3 cut(s) 20, 53, 236
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 62
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 193
BmsI GCATC 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 173
BseJI GATNNNNATC 1 cut(s) 173
BseMII CTCAG 2 cut(s) 120, 128
BseXI GCAGC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 121, 129
BssMI GATC 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 129, 137
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 97, 242
BstV1I GCAGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 77
CviJI RGCY 3 cut(s) 20, 53, 236
CviKI_1 RGCY 3 cut(s) 20, 53, 236
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 129, 137
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 124
FaiI YATR 2 cut(s) 56, 103
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 242
HpyF3I CTNAG 2 cut(s) 129, 137
Kzo9I GATC 1 cut(s) 174
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 123
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 173, 235
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 2 cut(s) 124, 247
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 7 cut(s) 22, 28, 55, 100, 114, 189, 202
MseI TTAA 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 97, 242
NdeII GATC 1 cut(s) 174
PaeR7I CTCGAG 1 cut(s) 193
PkrI GCNGC 1 cut(s) 90
PspXI VCTCGAGB 1 cut(s) 193
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 250
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 174
SduI GDGCHC 1 cut(s) 145
SetI ASST 7 cut(s) 22, 33, 39, 55, 66, 200, 238
SfaNI GCATC 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 193
SgeI CNNG 7 cut(s) 19, 84, 86, 158, 205, 207, 245
SlaI CTCGAG 1 cut(s) 193
SmlI CTYRAG 2 cut(s) 5, 193
SmoI CTYRAG 2 cut(s) 5, 193
Sse9I AATT 2 cut(s) 124, 247
TaqI TCGA 1 cut(s) 194
TasI AATT 2 cut(s) 124, 247
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 174
XapI RAATTY 1 cut(s) 124
XhoI CTCGAG 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.