MD05G1213500.v1.1

Ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0021201
Physical Location & Seq
Reverse (-)
34480728 .. 34485727
5000 bp
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UTR
Exon/CDS
Intron
MD05G1213500.v1.1.491

Sequence Viewer

Length: 315 bp
ATGCTCAAGGTTGAGAATGTGAAAGCTCTGTTGGAGGTGGAGGTTGAGAATGTGAAAACTCTGTTGGAGGTGGAGACACGGGTACTGCTTCAGCAGCAGAAGGTGCTATGTGAGGGTAGGGAGATGAGGAATTCTGAGATGTTGAGTGCTCTTGGTGTCAAAGATGAAGACTGGATAATGATCGTATCTAATGTCACCTTGAGGAGTGTTGATTGTGGGAGTTTGGTGGGAAGAGTTCCCAAGCTCATTCTGCAAATTAAAGGATTCACAGACGCGACCAACAGAAAAAGGTTAATTGAACCACTCATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2

Protein Analysis

105

Amino Acids

11.77

Weight (kDa)

6.31

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 14 - 62 3.1e-06 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021201)

Species Orthologous Gene IDs
malus_domestica MD05G1213200.v1.1 MD05G1213500.v1.1
prunus_persica Prupe.6G089200_v2.0.a1 Prupe.6G089200_v2.0.a1 Prupe.6G089200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 275
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 1 cut(s) 84
AgsI TTSAA 1 cut(s) 299
AjuI GAANNNNNNNTTGG 4 cut(s) 14, 46, 47, 79
AluBI AGCT 2 cut(s) 26, 244
AluI AGCT 2 cut(s) 26, 244
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 68
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 220
BsaBI GATNNNNATC 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 179
BseJI GATNNNNATC 1 cut(s) 179
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 275
BsrI ACTGG 1 cut(s) 176
BssMI GATC 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 275
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 3 cut(s) 94, 103, 250
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 174
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 83
CviJI RGCY 2 cut(s) 26, 244
CviKI_1 RGCY 2 cut(s) 26, 244
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 130
FaiI YATR 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
HgaI GACGC 1 cut(s) 281
HinfI GANTC 1 cut(s) 264
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 103, 250
HpyF3I CTNAG 1 cut(s) 135
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 1 cut(s) 157
Lsp1109I GCAGC 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 2 cut(s) 179, 243
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 3 cut(s) 130, 255, 294
MmeI TCCRAC 2 cut(s) 12, 45
MnlI CCTC 6 cut(s) 28, 34, 61, 106, 120, 195
MseI TTAA 2 cut(s) 258, 293
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 3 cut(s) 94, 103, 250
NdeII GATC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 264
PkrI GCNGC 1 cut(s) 96
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 2 cut(s) 258, 293
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 1 cut(s) 180
SduI GDGCHC 1 cut(s) 151
SetI ASST 9 cut(s) 12, 28, 39, 45, 72, 105, 200, 246, 293
SgeI CNNG 8 cut(s) 19, 90, 92, 164, 184, 211, 253, 286
SmlI CTYRAG 2 cut(s) 5, 199
SmoI CTYRAG 2 cut(s) 5, 199
Sse9I AATT 3 cut(s) 130, 255, 294
TasI AATT 3 cut(s) 130, 255, 294
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 2 cut(s) 258, 293
Tru9I TTAA 2 cut(s) 258, 293
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 180
XapI RAATTY 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.